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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
ulaG and ulaR are separated by 107 nucleotides
ulaR and yjfP overlap by 4 nucleotides
yjfP and bsmA are separated by 181 nucleotides
bsmA and yjfN are separated by 148 nucleotides
HEPCGN_10385: ulaG - L-ascorbate 6-phosphate lactonase, at 820,435 to 821,499
ulaG
HEPCGN_10390: ulaR - HTH-type transcriptional regulator UlaR, at 821,607 to 822,362
ulaR
HEPCGN_10395: yjfP - esterase, at 822,359 to 823,108
yjfP
HEPCGN_10400: bsmA - biofilm peroxide resistance protein BsmA, at 823,290 to 823,619
bsmA
HEPCGN_10405: yjfN - protease activator YjfN, at 823,768 to 824,043
yjfN
Group
Condition
HEPCGN
_10385
HEPCGN
_10390
HEPCGN
_10395
HEPCGN
_10400
HEPCGN
_10405
ulaG
ulaR
yjfP
bsmA
yjfN
carbon source
L-Arabinose
-0.2
-0.2
+0.0
-0.2
-0.3
carbon source
Casamino-acids
-0.1
-0.5
-0.1
+0.0
-0.1
phage
Bas19
-0.4
-0.7
+0.0
+0.0
+0.4
phage
Bas38
-0.1
-0.3
-0.0
-0.1
+0.1
carbon source
Sodium-DL-Lactate
-0.3
+0.1
-0.0
-0.1
-0.2
no phage control
Control_ECOR38
-0.0
-0.1
+0.1
+0.0
-0.2
phage
TP7
+0.3
-1.2
-0.1
+0.1
+0.7
phage
RB23
-0.1
-0.3
-0.4
+0.1
+0.5
phage
Bas48
-0.2
-0.6
+0.1
+0.2
+0.3
phage
Bas51
-0.1
-0.6
-0.1
+0.3
+0.3
carbon source
Sodium-DL-Lactate
+0.0
-0.2
+0.0
-0.1
+0.2
phage
Bas48
+0.0
-1.0
-0.0
+0.2
+0.8
carbon source
Casamino-acids
-0.0
-0.2
-0.1
+0.2
+0.1
phage
Bas39
+0.1
-0.3
+0.1
-0.0
+0.3
phage
Bas38
-0.2
-0.3
+0.0
+0.2
+0.3
phage
RB68
+0.0
-0.3
+0.1
+0.3
+0.0
phage
RB23
-0.0
-0.6
-0.0
+0.3
+0.5
phage
Bas39
+0.2
-0.5
+0.1
+0.1
+0.3
phage
Bas19
+0.2
-0.3
+0.0
+0.1
+0.2
phage
Bas55
-0.1
-0.5
-0.0
+0.3
+0.6
phage
TP7
-0.1
-1.3
+0.3
+0.7
+0.7
carbon source
L-Arabinose
-0.0
+0.0
-0.2
+0.1
+0.5
no phage control
Control_ECOR38
+0.2
-0.4
-0.0
+0.2
+0.4
carbon source
D-Glucose
+0.2
-0.2
-0.1
+0.0
+0.4
phage
Phi92
-0.1
+0.1
+0.0
-0.1
+0.4
phage
K20
+0.3
-0.6
-0.1
+0.3
+0.5
phage
K20
-0.0
-0.1
+0.2
+0.2
+0.3
phage
Phi92
+0.3
+0.5
-0.1
+0.5
-0.5
phage
Bas55
-0.0
+0.2
+0.2
+0.4
+0.5
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