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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
argF and yfcC are separated by 56 nucleotides
yfcC and HEPCGN_10055 are separated by 115 nucleotides
HEPCGN_10055 and pyrB are separated by 227 nucleotides
pyrB and pyrI are separated by 12 nucleotides
HEPCGN_10045: argF - ornithine carbamoyltransferase, at 754,481 to 755,485
argF
HEPCGN_10050: yfcC - C4-dicarboxylate ABC transporter, at 755,542 to 756,945
yfcC
HEPCGN_10055: HEPCGN_10055 - ArgR family transcriptional regulator, at 757,061 to 757,549
_10055
HEPCGN_10060: pyrB - aspartate carbamoyltransferase, at 757,777 to 758,712
pyrB
HEPCGN_10065: pyrI - aspartate carbamoyltransferase regulatory subunit, at 758,725 to 759,186
pyrI
Group
Condition
HEPCGN
_10045
HEPCGN
_10050
HEPCGN
_10055
HEPCGN
_10060
HEPCGN
_10065
argF
yfcC
pyrB
pyrI
carbon source
D-Glucose
+0.0
+0.0
+0.2
-5.1
-1.7
carbon source
Sodium-DL-Lactate
-0.0
+0.1
-0.1
-4.8
-0.7
carbon source
Sodium-DL-Lactate
+0.2
+0.0
-0.3
-4.3
-0.4
carbon source
Casamino-acids
+0.2
+0.2
-0.5
-3.3
-0.5
carbon source
Casamino-acids
-0.1
+0.1
+0.2
-3.7
+0.0
carbon source
L-Arabinose
-0.0
+0.3
-0.1
-2.2
-0.1
carbon source
L-Arabinose
-0.3
-0.1
-0.1
-1.6
-0.1
phage
Phi92
-0.2
-0.1
-1.0
+0.0
-0.6
phage
TP7
-0.0
-0.5
-0.1
-0.5
-0.2
phage
Bas48
-0.4
-0.2
-0.1
-0.4
-0.0
phage
Bas55
-0.1
-0.1
-0.5
-0.2
-0.2
phage
RB23
+0.1
-0.0
-0.4
-0.1
-0.0
phage
Bas48
-0.0
-0.1
+0.0
+0.0
-0.3
phage
TP7
-0.1
+0.1
-0.2
+0.1
-0.3
phage
RB68
-0.1
-0.1
+0.1
+0.1
-0.3
phage
K20
-0.1
+0.1
-0.2
-0.1
+0.0
phage
K20
+0.0
-0.1
-0.2
+0.1
-0.1
phage
Bas19
+0.2
-0.1
-0.3
+0.1
-0.2
no phage control
Control_ECOR38
-0.1
+0.1
-0.2
+0.3
-0.2
phage
Bas19
+0.1
-0.3
+0.2
+0.1
+0.0
phage
Bas55
+0.1
-0.1
+0.2
-0.1
+0.0
no phage control
Control_ECOR38
-0.1
-0.1
+0.1
+0.1
+0.0
phage
RB23
-0.1
-0.1
-0.0
+0.2
+0.2
phage
Bas38
+0.1
-0.2
+0.2
+0.0
+0.0
phage
Bas51
+0.1
-0.1
-0.1
+0.1
+0.1
phage
Phi92
-0.1
+0.1
-0.1
+0.4
+0.0
phage
Bas39
+0.2
+0.1
-0.4
+0.2
+0.2
phage
Bas38
-0.2
-0.1
+0.1
+0.1
+0.4
phage
Bas39
-0.0
+0.0
+0.2
+0.2
+0.1
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