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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
tatD and yjjU overlap by 4 nucleotides
yjjU and ytjA are separated by 121 nucleotides
ytjA and osmY are separated by 126 nucleotides
osmY and prfC are separated by 392 nucleotides
HEPCGN_09265: tatD - metal-dependent hydrolase, at 598,638 to 599,417
tatD
HEPCGN_09270: yjjU - Uncharacterized protein YjjU, at 599,414 to 600,487
yjjU
HEPCGN_09275: ytjA - UPF0391 membrane protein YtjA, at 600,609 to 600,770
ytjA
HEPCGN_09280: osmY - molecular chaperone OsmY, at 600,897 to 601,502
osmY
HEPCGN_09285: prfC - peptide chain release factor 3, at 601,895 to 603,484
prfC
Group
Condition
HEPCGN
_09265
HEPCGN
_09270
HEPCGN
_09275
HEPCGN
_09280
HEPCGN
_09285
tatD
yjjU
ytjA
osmY
prfC
phage
TP7
+0.0
+0.1
-0.8
-0.4
-0.4
phage
RB23
-0.3
-0.3
-0.3
-0.2
-0.1
phage
Bas55
-0.1
+0.0
+0.1
-0.9
-0.3
phage
TP7
-0.0
+0.1
-0.9
-0.0
-0.2
phage
Bas55
-0.3
+0.1
-0.4
-0.0
-0.4
carbon source
Casamino-acids
-0.0
+0.1
-0.1
-0.7
-0.2
phage
Bas48
-0.0
-0.2
-0.2
-0.3
-0.2
phage
Bas39
-0.0
-0.0
-0.2
-0.1
-0.4
phage
RB23
-0.2
+0.0
+0.0
+0.0
-0.5
phage
K20
+0.1
-0.0
-0.3
-0.4
-0.1
phage
RB68
-0.1
+0.2
-0.1
-0.1
-0.7
no phage control
Control_ECOR38
-0.1
-0.1
+0.0
+0.1
-0.5
carbon source
Sodium-DL-Lactate
+0.2
-0.2
-0.3
-0.3
-0.0
phage
Bas38
-0.1
+0.0
-0.1
+0.0
-0.5
phage
Bas48
-0.2
-0.1
+0.3
-0.4
-0.1
phage
Bas39
-0.0
-0.0
-0.4
+0.3
-0.3
phage
Bas19
-0.1
+0.1
-0.0
+0.0
-0.4
no phage control
Control_ECOR38
+0.1
-0.1
-0.1
+0.1
-0.3
carbon source
L-Arabinose
-0.5
-0.1
+0.6
+0.0
-0.4
carbon source
D-Glucose
-0.2
-0.1
+0.4
-0.4
-0.0
phage
Bas19
-0.2
+0.0
+0.1
+0.0
-0.2
phage
Bas38
+0.0
+0.1
+0.2
+0.0
-0.5
phage
Bas51
+0.3
-0.0
-0.1
+0.1
-0.3
phage
K20
-0.1
-0.0
+0.6
-0.1
-0.3
carbon source
Casamino-acids
+0.2
+0.1
+0.1
+0.1
-0.1
carbon source
Sodium-DL-Lactate
+0.0
-0.2
+0.4
+0.2
-0.1
carbon source
L-Arabinose
+0.2
+0.0
+0.5
-0.1
-0.0
phage
Phi92
-0.4
+0.1
+0.2
+0.0
+1.0
phage
Phi92
-0.1
+0.3
+0.5
+0.3
+1.1
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