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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
yaaJ and yaaA are separated by 69 nucleotides
yaaA and yaaX are separated by 39 nucleotides
yaaX and thrC are separated by 213 nucleotides
thrC and thrB are separated by 0 nucleotides
HEPCGN_09090: yaaJ - Uncharacterized transporter YaaJ, at 564,778 to 566,208
yaaJ
HEPCGN_09095: yaaA - peroxide stress protein YaaA, at 566,278 to 567,054
yaaA
HEPCGN_09100: yaaX - Uncharacterized protein YaaX, at 567,094 to 567,390
yaaX
HEPCGN_09105: thrC - threonine synthase, at 567,604 to 568,890
thrC
HEPCGN_09110: thrB - homoserine kinase, at 568,891 to 569,823
thrB
Group
Condition
HEPCGN
_09090
HEPCGN
_09095
HEPCGN
_09100
HEPCGN
_09105
HEPCGN
_09110
yaaJ
yaaA
yaaX
thrC
thrB
carbon source
Sodium-DL-Lactate
+0.2
+0.1
+0.2
-6.9
-7.6
carbon source
Sodium-DL-Lactate
-0.0
-0.1
+0.3
-5.4
-4.2
carbon source
D-Glucose
+0.1
-0.2
+0.1
-2.6
-2.3
carbon source
L-Arabinose
+0.3
+0.0
+0.1
-2.5
-2.7
carbon source
L-Arabinose
+0.2
-0.2
+0.1
-2.8
-1.9
phage
Bas48
-0.0
-0.1
-0.3
-0.1
-0.6
no phage control
Control_ECOR38
-0.1
-0.3
-0.3
-0.0
-0.3
phage
Bas39
+0.0
-0.4
+0.1
-0.3
-0.3
phage
Bas38
+0.0
-0.1
-0.2
-0.0
-0.4
phage
Bas19
-0.0
-0.2
-0.0
+0.0
-0.5
phage
Bas51
-0.0
-0.3
-0.1
-0.2
-0.0
no phage control
Control_ECOR38
+0.1
-0.2
-0.3
-0.2
+0.0
carbon source
Casamino-acids
-0.1
-0.0
-0.1
-0.2
-0.1
phage
TP7
+0.1
-0.0
-0.4
+0.5
-0.7
phage
Bas38
-0.0
-0.2
-0.2
+0.0
-0.0
phage
Bas19
-0.2
+0.1
-0.2
-0.1
-0.1
phage
Bas55
-0.0
-0.0
-0.1
+0.0
-0.2
phage
Bas55
+0.0
-0.0
+0.1
-0.2
-0.2
phage
K20
-0.2
+0.1
-0.1
-0.1
+0.2
phage
Phi92
+0.4
-0.2
-0.3
+0.3
-0.2
phage
RB68
-0.1
+0.1
-0.0
+0.0
+0.1
phage
RB23
-0.3
-0.2
+0.1
+0.2
+0.2
phage
RB23
-0.1
-0.0
-0.2
+0.1
+0.4
phage
Bas39
+0.0
-0.1
+0.0
-0.0
+0.3
phage
K20
-0.0
+0.0
+0.0
-0.0
+0.2
carbon source
Casamino-acids
+0.1
+0.1
+0.1
-0.0
-0.1
phage
TP7
+0.1
+0.1
-0.0
+0.5
-0.3
phage
Bas48
+0.1
+0.2
+0.3
+0.0
-0.2
phage
Phi92
+0.5
-0.1
+0.5
-0.2
-0.3
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