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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
HEPCGN_09005 and nhaR are separated by 37 nucleotides
nhaR and nhaA are separated by 65 nucleotides
nhaA and HEPCGN_09020 are separated by 251 nucleotides
HEPCGN_09020 and HEPCGN_09025 are separated by 129 nucleotides
HEPCGN_09005: HEPCGN_09005 - fimbrial family protein, at 548,106 to 549,065
_09005
HEPCGN_09010: nhaR - transcriptional activator NhaR, at 549,103 to 550,002
nhaR
HEPCGN_09015: nhaA - Na+/H+ antiporter NhaA, at 550,068 to 551,234
nhaA
HEPCGN_09020: HEPCGN_09020 - cytoplasmic protein, at 551,486 to 552,730
_09020
HEPCGN_09025: HEPCGN_09025 - arylsulfatase, at 552,860 to 554,353
_09025
Group
Condition
HEPCGN
_09005
HEPCGN
_09010
HEPCGN
_09015
HEPCGN
_09020
HEPCGN
_09025
nhaR
nhaA
phage
TP7
-0.8
+0.3
-1.2
-0.0
-0.2
phage
Bas19
-0.2
-0.1
-0.6
-0.3
+0.2
phage
Phi92
-0.3
-0.1
-0.6
+0.3
-0.3
phage
Bas48
-0.4
-0.2
-0.3
+0.0
+0.2
phage
Bas19
+0.1
+0.0
-0.7
-0.2
+0.1
phage
K20
-0.2
-0.2
-0.4
+0.1
-0.0
phage
K20
-0.1
-0.1
-0.4
-0.1
+0.2
phage
RB23
-0.1
+0.3
-0.6
+0.0
-0.1
phage
Bas48
+0.2
-0.0
-0.5
-0.2
+0.1
no phage control
Control_ECOR38
-0.1
-0.1
-0.1
+0.0
-0.2
carbon source
L-Arabinose
-0.3
-0.0
-0.2
+0.0
+0.1
phage
Bas55
-0.1
-0.1
-0.1
+0.0
-0.0
phage
TP7
-0.4
+0.0
-0.2
+0.1
+0.2
phage
Bas38
-0.0
-0.2
-0.2
+0.1
+0.0
no phage control
Control_ECOR38
+0.0
-0.1
-0.3
+0.2
-0.0
phage
Bas55
+0.2
-0.1
-0.1
-0.3
+0.0
phage
Bas51
+0.3
-0.2
-0.3
+0.0
-0.1
phage
Bas39
+0.2
-0.1
-0.2
-0.0
-0.0
carbon source
Casamino-acids
+0.0
-0.0
+0.1
-0.1
+0.0
carbon source
Casamino-acids
+0.1
+0.1
+0.0
-0.1
-0.1
phage
Phi92
+0.2
-0.5
+0.3
+0.1
-0.0
phage
Bas38
+0.1
-0.2
+0.2
+0.1
-0.1
phage
RB23
+0.1
+0.1
+0.0
-0.0
-0.0
carbon source
L-Arabinose
+0.3
+0.2
-0.0
-0.3
-0.0
phage
Bas39
+0.5
-0.2
-0.2
+0.2
-0.0
carbon source
Sodium-DL-Lactate
+0.3
-0.1
-0.1
+0.1
+0.0
phage
RB68
+0.1
+0.1
-0.0
-0.1
+0.2
carbon source
Sodium-DL-Lactate
+0.2
+0.0
-0.2
+0.2
+0.1
carbon source
D-Glucose
-0.0
+0.2
+0.2
-0.1
+0.1
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