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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
lptD and surA are separated by 52 nucleotides
surA and pdxA overlap by 1 nucleotides
pdxA and rsmA overlap by 4 nucleotides
rsmA and apaG are separated by 2 nucleotides
HEPCGN_08810: lptD - LPS assembly protein LptD, at 505,307 to 507,661
lptD
HEPCGN_08815: surA - peptidylprolyl isomerase SurA, at 507,714 to 509,000
surA
HEPCGN_08820: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 509,000 to 509,989
pdxA
HEPCGN_08825: rsmA - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA, at 509,986 to 510,807
rsmA
HEPCGN_08830: apaG - Co2+/Mg2+ efflux protein ApaG, at 510,810 to 511,187
apaG
Group
Condition
HEPCGN
_08810
HEPCGN
_08815
HEPCGN
_08820
HEPCGN
_08825
HEPCGN
_08830
lptD
surA
pdxA
rsmA
apaG
carbon source
Sodium-DL-Lactate
N.D.
-6.8
-3.3
-0.1
-0.3
carbon source
Casamino-acids
N.D.
-6.2
-2.8
-0.2
-0.6
carbon source
Casamino-acids
N.D.
-6.8
-2.9
-0.7
+0.5
carbon source
Sodium-DL-Lactate
N.D.
-6.2
-2.8
-0.4
-0.2
carbon source
L-Arabinose
N.D.
-5.3
-2.6
-0.2
-0.5
carbon source
L-Arabinose
N.D.
-6.5
-2.1
+0.1
+0.4
carbon source
D-Glucose
N.D.
-4.7
-2.0
-0.3
+0.5
phage
Bas19
N.D.
-1.6
+0.1
-1.6
-2.0
no phage control
Control_ECOR38
N.D.
-3.4
-0.4
-1.0
-0.2
phage
TP7
N.D.
-1.3
-0.1
-3.4
-0.1
phage
Bas39
N.D.
-3.8
-0.1
-0.8
-0.1
phage
RB23
N.D.
-1.6
-0.3
-1.3
-1.4
phage
Bas38
N.D.
-3.8
+0.1
-0.5
-0.1
no phage control
Control_ECOR38
N.D.
-3.0
+0.1
-1.1
+0.2
phage
TP7
N.D.
-1.5
+0.2
-2.8
+0.5
phage
RB23
N.D.
-1.8
-0.0
-1.8
-0.0
phage
Bas51
N.D.
-2.8
+0.1
-1.0
+0.4
phage
Bas39
N.D.
-2.6
-0.1
-0.7
+0.1
phage
RB68
N.D.
-1.8
-0.0
-1.3
+0.0
phage
Bas19
N.D.
-1.6
+0.2
-1.5
-0.1
phage
Bas55
N.D.
-1.3
-0.2
-0.8
-0.6
phage
K20
N.D.
-1.7
-0.2
-1.0
+0.3
phage
Bas55
N.D.
-1.7
+0.2
-0.4
-0.6
phage
K20
N.D.
-1.7
+0.1
-0.5
-0.3
phage
Bas48
N.D.
-1.7
+0.1
-0.9
+0.5
phage
Bas38
N.D.
-0.8
+0.1
-0.8
+0.1
phage
Bas48
N.D.
-1.6
+0.1
-0.2
+0.9
phage
Phi92
N.D.
-0.6
+0.1
+3.0
-0.6
phage
Phi92
N.D.
-0.3
+0.0
+3.3
-0.0
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