Fitness for 5 genes in Escherichia coli ECOR38

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500 ntlptD and surA are separated by 52 nucleotidessurA and pdxA overlap by 1 nucleotidespdxA and rsmA overlap by 4 nucleotidesrsmA and apaG are separated by 2 nucleotides HEPCGN_08810: lptD - LPS assembly protein LptD, at 505,307 to 507,661 lptD HEPCGN_08815: surA - peptidylprolyl isomerase SurA, at 507,714 to 509,000 surA HEPCGN_08820: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 509,000 to 509,989 pdxA HEPCGN_08825: rsmA - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA, at 509,986 to 510,807 rsmA HEPCGN_08830: apaG - Co2+/Mg2+ efflux protein ApaG, at 510,810 to 511,187 apaG
Group Condition HEPCGN_08810 HEPCGN_08815 HEPCGN_08820 HEPCGN_08825 HEPCGN_08830
lptD surA pdxA rsmA apaG
carbon source Sodium-DL-Lactate N.D. -6.8 -3.3 -0.1 -0.3
carbon source Casamino-acids N.D. -6.2 -2.8 -0.2 -0.6
carbon source Casamino-acids N.D. -6.8 -2.9 -0.7 +0.5
carbon source Sodium-DL-Lactate N.D. -6.2 -2.8 -0.4 -0.2
carbon source L-Arabinose N.D. -5.3 -2.6 -0.2 -0.5
carbon source L-Arabinose N.D. -6.5 -2.1 +0.1 +0.4
carbon source D-Glucose N.D. -4.7 -2.0 -0.3 +0.5
phage Bas19 N.D. -1.6 +0.1 -1.6 -2.0
no phage control Control_ECOR38 N.D. -3.4 -0.4 -1.0 -0.2
phage TP7 N.D. -1.3 -0.1 -3.4 -0.1
phage Bas39 N.D. -3.8 -0.1 -0.8 -0.1
phage RB23 N.D. -1.6 -0.3 -1.3 -1.4
phage Bas38 N.D. -3.8 +0.1 -0.5 -0.1
no phage control Control_ECOR38 N.D. -3.0 +0.1 -1.1 +0.2
phage TP7 N.D. -1.5 +0.2 -2.8 +0.5
phage RB23 N.D. -1.8 -0.0 -1.8 -0.0
phage Bas51 N.D. -2.8 +0.1 -1.0 +0.4
phage Bas39 N.D. -2.6 -0.1 -0.7 +0.1
phage RB68 N.D. -1.8 -0.0 -1.3 +0.0
phage Bas19 N.D. -1.6 +0.2 -1.5 -0.1
phage Bas55 N.D. -1.3 -0.2 -0.8 -0.6
phage K20 N.D. -1.7 -0.2 -1.0 +0.3
phage Bas55 N.D. -1.7 +0.2 -0.4 -0.6
phage K20 N.D. -1.7 +0.1 -0.5 -0.3
phage Bas48 N.D. -1.7 +0.1 -0.9 +0.5
phage Bas38 N.D. -0.8 +0.1 -0.8 +0.1
phage Bas48 N.D. -1.6 +0.1 -0.2 +0.9
phage Phi92 N.D. -0.6 +0.1 +3.0 -0.6
phage Phi92 N.D. -0.3 +0.0 +3.3 -0.0
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