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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Number of genes on each side:
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
HEPCGN_08755 and HEPCGN_08760 are separated by 6 nucleotides
HEPCGN_08760 and araC are separated by 513 nucleotides
araC and araB are separated by 338 nucleotides
araB and araA are separated by 10 nucleotides
HEPCGN_08755: HEPCGN_08755 - hypothetical protein, at 490,954 to 491,376
_08755
HEPCGN_08760: HEPCGN_08760 - hypothetical protein, at 491,383 to 492,231
_08760
HEPCGN_08765: araC - arabinose operon transcriptional regulator AraC, at 492,745 to 493,590
araC
HEPCGN_08770: araB - ribulokinase, at 493,929 to 495,629
araB
HEPCGN_08775: araA - L-arabinose isomerase, at 495,640 to 497,142
araA
Group
Condition
HEPCGN
_08755
HEPCGN
_08760
HEPCGN
_08765
HEPCGN
_08770
HEPCGN
_08775
araC
araB
araA
carbon source
L-Arabinose
-0.1
-0.1
-1.5
-1.6
-2.0
carbon source
L-Arabinose
+0.7
+0.1
-1.8
-1.4
-1.4
phage
K20
-0.7
-0.1
-0.3
+0.0
-0.1
phage
Bas38
-1.2
+0.3
+0.1
-0.2
+0.0
phage
Bas38
-0.8
+0.0
-0.0
+0.1
+0.1
no phage control
Control_ECOR38
-0.5
+0.0
+0.1
-0.1
-0.1
phage
Bas51
-0.3
+0.3
-0.6
-0.2
+0.2
phage
Phi92
+0.1
-0.4
-0.5
+0.0
+0.3
carbon source
Sodium-DL-Lactate
-0.4
-0.1
+0.0
-0.1
+0.3
phage
Bas39
-0.6
+0.0
+0.1
-0.0
+0.1
phage
Bas39
-0.1
-0.1
+0.3
-0.2
-0.2
carbon source
Casamino-acids
+0.6
-0.2
-0.4
-0.0
-0.2
carbon source
Sodium-DL-Lactate
+0.0
-0.2
+0.2
+0.1
-0.1
phage
Bas48
+0.3
+0.1
-0.1
-0.1
-0.2
phage
RB23
+0.6
-0.2
-0.3
+0.1
-0.3
phage
RB68
+0.7
-0.2
-0.2
-0.0
-0.2
phage
Bas19
+0.4
-0.2
-0.5
+0.0
+0.3
phage
Bas19
+0.4
-0.2
-0.0
-0.0
-0.1
phage
Bas55
+0.3
-0.4
+0.1
+0.2
-0.1
phage
K20
+0.1
-0.0
+0.0
+0.2
-0.1
phage
Bas48
+0.3
+0.1
-0.4
-0.0
+0.2
no phage control
Control_ECOR38
+0.6
-0.0
-0.2
-0.1
+0.0
phage
TP7
+1.4
-0.4
-0.6
+0.1
-0.1
carbon source
D-Glucose
+0.4
-0.3
+0.5
+0.1
-0.1
phage
TP7
+1.5
-0.5
-0.0
+0.1
-0.5
phage
Bas55
+0.4
-0.1
+0.2
-0.0
+0.2
carbon source
Casamino-acids
+0.4
+0.1
+0.2
-0.0
-0.0
phage
RB23
+1.3
-0.2
-0.0
-0.2
-0.0
phage
Phi92
+1.2
+0.1
-0.3
+0.1
+0.6
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