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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
yaeF and nlpE are separated by 29 nucleotides
nlpE and arfB are separated by 13 nucleotides
arfB and yaeQ overlap by 4 nucleotides
yaeQ and yaeP are separated by 165 nucleotides
HEPCGN_08040: yaeF - YaeF family permuted papain-like enzyme, at 343,380 to 344,183
yaeF
HEPCGN_08045: nlpE - envelope stress response activation lipoprotein NlpE, at 344,213 to 344,923
nlpE
HEPCGN_08050: arfB - aminoacyl-tRNA hydrolase, at 344,937 to 345,359
arfB
HEPCGN_08055: yaeQ - Uncharacterized protein YaeQ, at 345,356 to 345,901
yaeQ
HEPCGN_08060: yaeP - YaeP family protein, at 346,067 to 346,267
yaeP
Group
Condition
HEPCGN
_08040
HEPCGN
_08045
HEPCGN
_08050
HEPCGN
_08055
HEPCGN
_08060
yaeF
nlpE
arfB
yaeQ
yaeP
phage
Bas48
-0.1
-0.1
-0.4
+0.1
-1.8
phage
TP7
-0.1
-0.6
+0.3
-0.3
-1.2
phage
Bas55
-0.1
-0.3
-1.1
-0.2
+0.2
phage
Bas19
-0.1
-0.2
-0.4
-0.1
-0.5
phage
RB23
-0.1
-0.1
-0.4
-0.3
-0.0
phage
RB23
+0.2
-0.2
-0.5
-0.0
-0.3
phage
Bas48
+0.2
-0.3
-0.4
+0.2
-0.3
phage
RB68
+0.1
+0.3
-0.3
+0.0
-0.6
phage
K20
+0.1
-0.1
-0.6
-0.2
+0.2
phage
Phi92
-0.1
-0.1
-0.0
+0.5
-0.7
phage
Bas19
-0.2
-0.2
-0.0
+0.2
-0.2
phage
Bas55
+0.3
+0.0
-0.2
+0.3
-0.8
carbon source
Sodium-DL-Lactate
+0.1
-0.2
+0.0
+0.1
-0.2
phage
TP7
+0.1
-0.2
-0.0
-0.3
+0.3
phage
K20
+0.0
-0.2
+0.2
+0.1
-0.3
no phage control
Control_ECOR38
-0.1
+0.1
+0.0
+0.1
-0.2
carbon source
L-Arabinose
-0.0
-0.3
+0.5
-0.3
+0.2
phage
Phi92
-0.1
-0.3
+0.2
-0.0
+0.3
phage
Bas51
-0.1
-0.1
+0.1
+0.1
+0.2
phage
Bas38
+0.1
+0.2
-0.1
+0.1
-0.0
carbon source
Casamino-acids
+0.1
+0.1
+0.3
-0.0
-0.3
phage
Bas39
-0.1
+0.1
-0.0
+0.2
+0.3
phage
Bas38
-0.1
-0.1
+0.0
+0.3
+0.3
no phage control
Control_ECOR38
-0.0
-0.1
+0.2
+0.1
+0.3
carbon source
L-Arabinose
+0.2
+0.0
+0.4
+0.4
-0.5
carbon source
Sodium-DL-Lactate
+0.2
-0.0
+0.5
-0.0
+0.2
carbon source
Casamino-acids
+0.2
+0.1
+0.2
+0.2
+0.1
carbon source
D-Glucose
+0.2
-0.1
+0.4
+0.3
+0.3
phage
Bas39
+0.1
-0.0
+0.6
+0.1
+0.7
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