Fitness for 5 genes in Escherichia coli ECOR38

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500 ntgpt and pepD are separated by 260 nucleotidespepD and prfH are separated by 56 nucleotidesprfH and rtcB overlap by 4 nucleotidesrtcB and yafP are separated by 190 nucleotides HEPCGN_07800: gpt - xanthine phosphoribosyltransferase, at 302,690 to 303,148 gpt HEPCGN_07805: pepD - cytosol nonspecific dipeptidase, at 303,409 to 304,866 pepD HEPCGN_07810: prfH - peptide chain release factor H, at 304,923 to 305,537 prfH HEPCGN_07815: rtcB - RNA ligase RtcB family protein, at 305,534 to 306,673 rtcB HEPCGN_07820: yafP - GNAT family N-acetyltransferase, at 306,864 to 307,316 yafP
Group Condition HEPCGN_07800 HEPCGN_07805 HEPCGN_07810 HEPCGN_07815 HEPCGN_07820
gpt pepD prfH rtcB yafP
carbon source D-Glucose -0.4 +0.1 -1.1 +0.2 -0.5
phage Bas19 -0.5 +0.3 -0.7 -0.1 -0.2
phage TP7 -1.0 +0.1 -0.3 -0.3 +0.4
phage Bas55 -1.7 +0.1 -0.0 +0.4 +0.3
phage Bas19 -0.2 -0.1 -0.7 -0.1 +0.2
phage Bas48 -0.6 +0.0 -0.0 -0.1 -0.1
phage K20 -0.8 +0.2 -0.2 +0.1 +0.0
carbon source L-Arabinose -0.3 +0.1 -0.7 +0.1 +0.2
phage Bas55 -0.5 -0.1 +0.0 +0.0 -0.1
phage RB68 -0.3 +0.0 -0.1 -0.2 -0.1
no phage control Control_ECOR38 -0.1 -0.2 -0.3 -0.0 +0.1
carbon source Casamino-acids -0.6 -0.0 +0.1 +0.0 +0.0
phage Bas51 -0.0 -0.3 +0.0 -0.1 +0.0
phage Bas39 -0.2 +0.1 -0.1 -0.1 -0.0
carbon source Sodium-DL-Lactate -0.6 +0.0 +0.2 -0.0 +0.1
phage Bas38 +0.5 -0.3 -0.3 -0.0 -0.1
phage RB23 -0.2 +0.2 -0.0 -0.1 +0.0
phage Phi92 -0.2 +0.4 -0.2 -0.0 -0.0
phage K20 -0.2 -0.0 -0.1 -0.0 +0.3
phage Bas39 +0.3 -0.2 -0.3 +0.1 +0.2
carbon source Casamino-acids -0.1 -0.0 +0.2 +0.1 -0.2
phage Bas38 +0.4 -0.2 +0.0 -0.1 +0.0
phage RB23 +0.0 -0.0 +0.3 +0.0 -0.1
carbon source L-Arabinose -0.5 +0.4 +0.4 +0.0 -0.1
carbon source Sodium-DL-Lactate +0.1 -0.1 +0.5 +0.0 -0.0
no phage control Control_ECOR38 +0.1 +0.1 +0.2 +0.1 +0.1
phage Phi92 +0.5 +0.1 +0.2 -0.2 +0.1
phage Bas48 +0.6 -0.0 +0.4 +0.2 -0.0
phage TP7 -0.2 +0.7 +0.4 -0.1 +0.5
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