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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
ykiD and HEPCGN_07220 are separated by 199 nucleotides
HEPCGN_07220 and ppnP are separated by 103 nucleotides
ppnP and aroM are separated by 71 nucleotides
aroM and yaiA are separated by 257 nucleotides
HEPCGN_07215: ykiD - Protein YkiD, at 180,116 to 180,199
ykiD
HEPCGN_07220: HEPCGN_07220 - hypothetical protein, at 180,399 to 180,578
_07220
HEPCGN_07225: ppnP - pyrimidine/purine nucleoside phosphorylase, at 180,682 to 180,966
ppnP
HEPCGN_07230: aroM - Protein AroM, at 181,038 to 181,715
aroM
HEPCGN_07235: yaiA - Uncharacterized protein YaiA, at 181,973 to 182,164
yaiA
Group
Condition
HEPCGN
_07215
HEPCGN
_07220
HEPCGN
_07225
HEPCGN
_07230
HEPCGN
_07235
ykiD
ppnP
aroM
yaiA
phage
TP7
-0.0
-0.8
+0.1
-0.7
-0.2
phage
TP7
-0.9
-0.9
+0.7
+0.1
+0.1
phage
Bas39
-0.6
-0.1
-0.4
-0.1
+0.3
carbon source
Sodium-DL-Lactate
+0.0
-0.4
-0.1
-0.4
+0.0
phage
K20
+0.2
-0.5
-0.2
-0.1
-0.1
phage
Phi92
+0.2
-0.6
-0.4
+0.2
+0.0
phage
K20
+0.1
-0.3
-0.3
-0.2
+0.1
carbon source
L-Arabinose
+0.0
-0.3
-0.4
+0.0
-0.0
phage
RB23
-0.0
-1.0
+0.3
+0.0
+0.1
phage
Bas48
+0.3
-0.3
-0.1
-0.7
+0.2
phage
RB23
-0.0
+0.1
-0.0
-0.4
-0.2
phage
Bas48
+0.3
-0.8
+0.0
-0.1
+0.0
phage
Bas55
-0.3
-0.4
+0.1
-0.1
+0.2
phage
Bas51
+0.3
-0.1
-0.1
-0.6
+0.1
phage
Bas19
+0.3
+0.1
-0.2
-0.3
-0.2
no phage control
Control_ECOR38
+0.0
+0.4
-0.5
-0.3
+0.2
phage
Bas38
-0.1
+0.3
-0.1
-0.2
+0.1
carbon source
Casamino-acids
+0.0
+0.1
+0.0
-0.2
+0.1
carbon source
D-Glucose
+0.1
-0.0
-0.3
+0.3
+0.0
phage
Bas55
+0.1
-0.3
+0.1
+0.2
+0.0
phage
Bas38
-0.2
+0.6
-0.2
-0.1
+0.2
phage
RB68
-0.2
-0.2
+0.2
+0.4
+0.2
phage
Phi92
+0.5
-0.8
+0.3
+0.2
+0.2
carbon source
L-Arabinose
+0.2
+0.6
-0.2
+0.0
-0.2
phage
Bas39
-0.1
+0.3
+0.1
+0.0
+0.1
no phage control
Control_ECOR38
+0.4
+0.0
-0.1
-0.0
+0.3
carbon source
Casamino-acids
-0.1
+0.6
+0.2
-0.3
+0.1
carbon source
Sodium-DL-Lactate
+0.2
+0.4
+0.4
-0.2
-0.2
phage
Bas19
+0.1
+0.2
+0.2
+0.1
+0.2
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