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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
tnp-IS600 and HEPCGN_06310 are separated by 130 nucleotides
HEPCGN_06310 and istB are separated by 43 nucleotides
istB and istA overlap by 1 nucleotides
istA and ynfS are separated by 614 nucleotides
HEPCGN_06305: tnp-IS600 - IS3 family IS600 transposase, at 1,128,154 to 1,128,972
tnp-IS600
HEPCGN_06310: HEPCGN_06310 - antitermination protein, at 1,129,103 to 1,129,531
_06310
HEPCGN_06315: istB - IS21-like element IS100kyp family helper ATPase IstB, at 1,129,575 to 1,130,354
istB
HEPCGN_06320: istA - IS21-like element IS100 family transposase, at 1,130,354 to 1,131,376
istA
HEPCGN_06325: ynfS - Protein YnfS, at 1,131,991 to 1,132,080
ynfS
Group
Condition
HEPCGN
_06305
HEPCGN
_06310
HEPCGN
_06315
HEPCGN
_06320
HEPCGN
_06325
tnp-IS600
istB
istA
ynfS
phage
Bas55
N.D.
+0.3
N.D.
-0.2
-1.5
no phage control
Control_ECOR38
N.D.
-0.3
N.D.
-0.1
-0.6
phage
Bas48
N.D.
-0.3
N.D.
-0.1
-0.5
phage
Bas39
N.D.
+0.1
N.D.
-0.1
-0.7
phage
Bas51
N.D.
-0.0
N.D.
+0.0
-0.5
phage
Phi92
N.D.
+0.3
N.D.
-0.4
-0.4
no phage control
Control_ECOR38
N.D.
-0.1
N.D.
-0.0
-0.3
phage
Bas39
N.D.
-0.3
N.D.
-0.1
-0.0
phage
RB23
N.D.
-0.2
N.D.
-0.1
+0.0
carbon source
L-Arabinose
N.D.
+0.1
N.D.
-0.2
-0.0
phage
Bas38
N.D.
-0.4
N.D.
+0.2
+0.2
phage
RB68
N.D.
+0.0
N.D.
-0.3
+0.3
carbon source
Casamino-acids
N.D.
-0.2
N.D.
+0.1
+0.2
carbon source
L-Arabinose
N.D.
+0.2
N.D.
-0.3
+0.3
phage
Bas48
N.D.
-0.0
N.D.
-0.4
+0.5
carbon source
Sodium-DL-Lactate
N.D.
+0.1
N.D.
+0.1
-0.0
phage
K20
N.D.
+0.1
N.D.
-0.1
+0.3
phage
Bas19
N.D.
-0.1
N.D.
-0.3
+0.7
phage
TP7
N.D.
-0.3
N.D.
+0.2
+0.5
phage
Bas38
N.D.
+0.2
N.D.
-0.1
+0.4
carbon source
Casamino-acids
N.D.
+0.3
N.D.
+0.2
+0.1
phage
Phi92
N.D.
-0.1
N.D.
+0.4
+0.3
phage
Bas55
N.D.
+0.1
N.D.
-0.2
+0.7
phage
K20
N.D.
+0.3
N.D.
-0.5
+0.8
phage
RB23
N.D.
-0.1
N.D.
-0.0
+0.8
carbon source
Sodium-DL-Lactate
N.D.
+0.1
N.D.
-0.2
+0.8
carbon source
D-Glucose
N.D.
+0.2
N.D.
+0.4
+0.4
phage
Bas19
N.D.
+0.3
N.D.
-0.2
+1.0
phage
TP7
N.D.
+0.9
N.D.
+0.1
+0.6
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