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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
ydgT and ydgJ are separated by 640 nucleotides
ydgJ and add are separated by 35 nucleotides
add and malY are separated by 103 nucleotides
malY and malX are separated by 9 nucleotides
HEPCGN_05950: ydgT - transcription modulator YdgT, at 1,060,127 to 1,060,342
ydgT
HEPCGN_05955: ydgJ - Uncharacterized oxidoreductase YdgJ, at 1,060,983 to 1,062,023
ydgJ
HEPCGN_05960: add - adenosine deaminase, at 1,062,059 to 1,063,060
add
HEPCGN_05965: malY - bifunctional maltose regulon transcriptional repressor/cystathionine beta-lyase MalY, at 1,063,164 to 1,064,336
malY
HEPCGN_05970: malX - PTS maltose transporter subunit IICB, at 1,064,346 to 1,065,938
malX
Group
Condition
HEPCGN
_05950
HEPCGN
_05955
HEPCGN
_05960
HEPCGN
_05965
HEPCGN
_05970
ydgT
ydgJ
add
malY
malX
phage
Phi92
-3.3
+0.4
-0.5
+0.1
+0.3
phage
Phi92
-1.8
+0.3
-0.0
-0.1
+0.1
phage
K20
-0.3
+0.0
-0.3
+0.1
-0.2
phage
Bas55
+0.2
-0.2
-0.0
-0.4
-0.2
no phage control
Control_ECOR38
+0.1
+0.1
-0.6
-0.0
-0.0
carbon source
Casamino-acids
-0.3
-0.1
+0.0
+0.1
-0.2
carbon source
Sodium-DL-Lactate
-0.3
-0.1
-0.4
+0.2
+0.2
phage
Bas39
-0.1
-0.1
-0.1
-0.1
+0.0
phage
Bas38
+0.1
+0.2
-0.1
-0.2
-0.1
phage
Bas51
+0.2
-0.1
-0.0
-0.1
-0.2
carbon source
Casamino-acids
-0.3
-0.0
-0.1
+0.2
+0.1
carbon source
L-Arabinose
-0.3
+0.1
+0.0
+0.1
+0.0
carbon source
L-Arabinose
-0.0
-0.1
-0.3
+0.1
+0.4
carbon source
D-Glucose
-0.4
+0.1
+0.1
+0.2
+0.0
phage
RB23
+0.3
-0.3
-0.1
+0.1
+0.0
carbon source
Sodium-DL-Lactate
+0.1
+0.0
-0.2
+0.0
+0.2
no phage control
Control_ECOR38
+0.5
-0.1
-0.2
+0.1
-0.0
phage
Bas19
+0.6
+0.2
-0.4
+0.1
-0.2
phage
Bas19
+0.1
+0.2
+0.0
-0.0
+0.1
phage
Bas38
+0.2
+0.2
+0.0
-0.1
+0.1
phage
K20
-0.1
+0.2
+0.3
+0.1
+0.0
phage
Bas55
+0.5
+0.4
+0.1
-0.1
-0.3
phage
RB68
+0.4
+0.5
-0.1
+0.1
-0.1
phage
Bas39
+0.7
+0.1
-0.2
+0.1
+0.1
phage
Bas48
+1.4
-0.3
+0.6
-0.2
+0.1
phage
RB23
+1.5
+0.2
-0.0
-0.0
+0.2
phage
Bas48
+1.2
-0.1
+0.7
-0.1
+0.2
phage
TP7
+3.8
+0.1
+1.1
-0.1
+0.2
phage
TP7
+3.5
+0.3
+1.9
-0.1
-0.1
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