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Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
mdtK and ribE are separated by 214 nucleotides
ribE and cfa are separated by 39 nucleotides
cfa and punC are separated by 290 nucleotides
punC and punR are separated by 112 nucleotides
HEPCGN_05745: mdtK - multidrug efflux MATE transporter MdtK, at 1,020,465 to 1,021,838
mdtK
HEPCGN_05750: ribE - riboflavin synthase, at 1,022,053 to 1,022,694
ribE
HEPCGN_05755: cfa - cyclopropane fatty acyl phospholipid synthase, at 1,022,734 to 1,023,882
cfa
HEPCGN_05760: punC - purine nucleoside transporter PunC, at 1,024,173 to 1,025,384
punC
HEPCGN_05765: punR - DNA-binding transcriptional activator PunR, at 1,025,497 to 1,026,429
punR
Group
Condition
HEPCGN
_05745
HEPCGN
_05750
HEPCGN
_05755
HEPCGN
_05760
HEPCGN
_05765
mdtK
ribE
cfa
punC
punR
phage
TP7
+0.3
N.D.
-0.4
-0.8
-1.9
phage
TP7
-0.8
N.D.
-0.5
-0.7
-0.2
phage
Bas48
-0.4
N.D.
-0.3
-0.7
-0.4
phage
RB23
-0.2
N.D.
-0.2
-0.4
-0.5
carbon source
Sodium-DL-Lactate
-0.3
N.D.
-0.3
-0.7
-0.0
phage
Bas48
-0.0
N.D.
-0.7
-0.1
-0.4
phage
RB23
-0.0
N.D.
-0.5
-0.3
-0.2
phage
Bas19
+0.0
N.D.
-0.0
-0.4
-0.6
carbon source
L-Arabinose
-0.1
N.D.
-0.2
-0.3
-0.4
carbon source
L-Arabinose
-0.0
N.D.
-0.2
-0.3
-0.1
carbon source
Casamino-acids
-0.1
N.D.
-0.1
-0.1
-0.2
phage
K20
+0.1
N.D.
+0.0
-0.1
-0.6
phage
Bas19
+0.1
N.D.
+0.0
-0.3
-0.4
carbon source
Casamino-acids
-0.0
N.D.
+0.1
-0.4
-0.1
phage
Bas55
-0.2
N.D.
-0.0
-0.1
-0.2
phage
K20
-0.1
N.D.
-0.0
+0.0
-0.3
carbon source
Sodium-DL-Lactate
-0.2
N.D.
-0.0
-0.2
+0.1
phage
RB68
-0.1
N.D.
+0.0
-0.0
-0.1
carbon source
D-Glucose
-0.1
N.D.
-0.1
+0.0
+0.0
no phage control
Control_ECOR38
-0.1
N.D.
+0.3
-0.0
-0.2
phage
Bas38
-0.1
N.D.
+0.1
+0.1
-0.0
phage
Bas39
+0.0
N.D.
+0.0
-0.0
+0.0
phage
Bas55
+0.0
N.D.
+0.1
+0.1
-0.1
no phage control
Control_ECOR38
+0.1
N.D.
+0.1
+0.0
-0.1
phage
Bas38
-0.1
N.D.
-0.0
+0.0
+0.3
phage
Bas51
-0.1
N.D.
+0.2
-0.0
+0.3
phage
Bas39
-0.1
N.D.
+0.3
-0.0
+0.2
phage
Phi92
+0.1
N.D.
-0.0
+0.5
-0.2
phage
Phi92
+0.1
N.D.
+0.5
+0.3
+0.0
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