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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
pphA and yebW are separated by 0 nucleotides
yebW and yebV are separated by 20 nucleotides
yebV and rsmF are separated by 117 nucleotides
rsmF and yebT are separated by 73 nucleotides
HEPCGN_04825: pphA - protein-serine/threonine phosphatase, at 839,834 to 840,490
pphA
HEPCGN_04830: yebW - Uncharacterized protein YebW, at 840,491 to 840,766
yebW
HEPCGN_04835: yebV - Uncharacterized protein YebV, at 840,787 to 841,023
yebV
HEPCGN_04840: rsmF - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 841,141 to 842,586
rsmF
HEPCGN_04845: yebT - lipid-binding membrane homeostasis protein YebT, at 842,660 to 845,293
yebT
Group
Condition
HEPCGN
_04825
HEPCGN
_04830
HEPCGN
_04835
HEPCGN
_04840
HEPCGN
_04845
pphA
yebW
yebV
rsmF
yebT
phage
TP7
+0.1
-0.4
-1.5
-0.3
+0.1
carbon source
Sodium-DL-Lactate
-0.3
-0.3
-0.8
-0.2
-0.1
phage
Bas55
+0.3
-0.3
-1.0
-0.1
+0.1
phage
Phi92
-0.2
-0.2
-0.9
+0.7
-0.4
phage
TP7
-0.0
-0.4
-0.8
+0.2
-0.1
phage
RB23
+0.2
-0.1
-1.3
+0.3
+0.2
carbon source
D-Glucose
-0.0
-0.0
-0.1
-0.3
-0.2
phage
Bas51
-0.1
-0.4
-0.4
+0.2
+0.2
no phage control
Control_ECOR38
-0.1
-0.2
-0.2
+0.1
+0.0
phage
Bas19
+0.1
-0.4
+0.5
-0.5
+0.0
carbon source
Sodium-DL-Lactate
-0.0
-0.1
-0.0
-0.1
+0.1
phage
Bas19
-0.1
-0.7
+0.0
+0.3
+0.3
phage
Bas48
-0.1
-0.5
-0.1
+0.4
+0.1
phage
Bas39
-0.2
+0.0
+0.0
+0.0
-0.0
phage
RB23
-0.1
-0.0
-0.9
+0.8
+0.2
carbon source
Casamino-acids
+0.0
-0.2
+0.4
-0.2
+0.0
phage
Bas55
+0.2
-0.1
-0.4
+0.2
+0.1
phage
Bas39
-0.0
-0.0
+0.0
-0.0
+0.1
no phage control
Control_ECOR38
-0.1
+0.2
-0.1
+0.2
+0.0
carbon source
L-Arabinose
+0.0
+0.0
+0.4
-0.2
+0.0
phage
Phi92
-0.0
+0.3
-0.2
+0.4
-0.2
carbon source
Casamino-acids
+0.1
-0.4
+0.4
+0.2
-0.1
phage
Bas48
+0.2
-0.4
+0.6
-0.2
+0.1
phage
K20
-0.2
-0.3
+0.8
-0.3
+0.2
phage
RB68
+0.1
+0.2
+0.0
-0.0
-0.0
phage
K20
-0.1
+0.4
+0.2
+0.1
-0.0
phage
Bas38
-0.1
+0.1
+0.5
+0.1
+0.1
phage
Bas38
-0.1
+0.1
+0.6
+0.0
+0.2
carbon source
L-Arabinose
-0.1
-0.0
+0.8
+0.2
-0.1
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