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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
exoX and yobB are separated by 23 nucleotides
yobB and holE are separated by 101 nucleotides
holE and yobA are separated by 138 nucleotides
yobA and copD are separated by 3 nucleotides
HEPCGN_04785: exoX - exodeoxyribonuclease X, at 836,023 to 836,685
exoX
HEPCGN_04790: yobB - Uncharacterized protein YobB, at 836,709 to 837,365
yobB
HEPCGN_04795: holE - DNA polymerase III subunit theta, at 837,467 to 837,697
holE
HEPCGN_04800: yobA - CopC domain-containing protein YobA, at 837,836 to 838,210
yobA
HEPCGN_04805: copD - copper homeostasis membrane protein CopD, at 838,214 to 839,086
copD
Group
Condition
HEPCGN
_04785
HEPCGN
_04790
HEPCGN
_04795
HEPCGN
_04800
HEPCGN
_04805
exoX
yobB
holE
yobA
copD
phage
Phi92
+0.0
+0.2
-0.4
-0.6
-0.5
carbon source
L-Arabinose
+0.1
+0.1
-0.4
-0.2
-0.5
phage
Bas19
-0.0
-0.1
+0.1
-0.6
-0.2
carbon source
Sodium-DL-Lactate
-0.2
-0.0
+0.0
-0.2
-0.2
phage
Bas48
-0.0
+0.1
+0.0
-0.4
-0.3
carbon source
L-Arabinose
+0.3
-0.3
-0.5
+0.0
-0.2
phage
K20
+0.0
-0.0
+0.0
-0.1
-0.1
phage
Bas19
+0.1
-0.4
+0.2
+0.2
-0.2
phage
Bas55
+0.2
+0.1
+0.3
-0.5
-0.2
phage
K20
-0.0
-0.1
-0.1
-0.1
+0.3
phage
Bas39
+0.1
+0.2
-0.2
+0.2
-0.2
phage
TP7
-0.2
-0.4
+0.0
+0.6
+0.1
phage
RB23
+0.0
+0.2
-0.1
+0.8
-0.7
no phage control
Control_ECOR38
-0.1
+0.3
-0.2
+0.2
+0.0
carbon source
D-Glucose
+0.1
+0.2
+0.1
-0.2
+0.1
carbon source
Casamino-acids
-0.0
+0.2
+0.4
-0.2
-0.1
phage
Bas39
+0.1
+0.2
-0.2
+0.2
+0.1
phage
Bas48
-0.4
+0.1
+0.1
+0.5
+0.0
phage
RB23
+0.3
-0.0
-0.1
+0.2
+0.1
phage
Bas38
+0.1
+0.2
+0.3
+0.0
-0.2
phage
Bas55
+0.1
-0.0
-0.0
+0.5
-0.0
carbon source
Sodium-DL-Lactate
+0.1
+0.3
+0.4
+0.0
-0.3
phage
RB68
+0.1
+0.1
+0.3
-0.0
+0.1
phage
Bas51
+0.1
+0.4
-0.1
+0.1
+0.2
carbon source
Casamino-acids
+0.1
+0.3
+0.3
+0.1
-0.1
no phage control
Control_ECOR38
-0.1
-0.1
+0.6
+0.3
+0.0
phage
Bas38
-0.0
+0.2
+0.2
+0.3
+0.2
phage
Phi92
+0.3
-0.1
+0.3
+0.5
+0.1
phage
TP7
+0.2
+0.0
+0.7
+0.5
-0.3
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