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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
yebE and ptrB are separated by 206 nucleotides
ptrB and exoX overlap by 4 nucleotides
exoX and yobB are separated by 23 nucleotides
yobB and holE are separated by 101 nucleotides
HEPCGN_04775: yebE - Inner membrane protein YebE, at 833,100 to 833,759
yebE
HEPCGN_04780: ptrB - oligopeptidase B, at 833,966 to 836,026
ptrB
HEPCGN_04785: exoX - exodeoxyribonuclease X, at 836,023 to 836,685
exoX
HEPCGN_04790: yobB - Uncharacterized protein YobB, at 836,709 to 837,365
yobB
HEPCGN_04795: holE - DNA polymerase III subunit theta, at 837,467 to 837,697
holE
Group
Condition
HEPCGN
_04775
HEPCGN
_04780
HEPCGN
_04785
HEPCGN
_04790
HEPCGN
_04795
yebE
ptrB
exoX
yobB
holE
phage
TP7
+0.0
-0.3
-0.2
-0.4
+0.0
phage
Bas55
-0.4
-0.2
+0.1
-0.0
-0.0
phage
RB23
-0.5
-0.1
+0.0
+0.2
-0.1
phage
K20
-0.4
+0.2
-0.0
-0.1
-0.1
carbon source
L-Arabinose
-0.0
-0.0
+0.1
+0.1
-0.4
carbon source
Sodium-DL-Lactate
-0.0
+0.1
-0.2
-0.0
+0.0
no phage control
Control_ECOR38
-0.2
+0.0
-0.1
+0.3
-0.2
carbon source
L-Arabinose
+0.3
+0.0
+0.3
-0.3
-0.5
phage
Bas39
-0.3
+0.0
+0.1
+0.2
-0.2
phage
Bas19
-0.0
-0.1
-0.0
-0.1
+0.1
phage
Bas19
+0.1
-0.0
+0.1
-0.4
+0.2
phage
K20
+0.1
-0.2
+0.0
-0.0
+0.0
phage
Phi92
+0.5
-0.3
+0.0
+0.2
-0.4
phage
Bas48
+0.1
+0.1
-0.4
+0.1
+0.1
phage
Bas39
-0.1
+0.2
+0.1
+0.2
-0.2
phage
RB23
+0.0
+0.0
+0.3
-0.0
-0.1
no phage control
Control_ECOR38
-0.2
+0.0
-0.1
-0.1
+0.6
phage
Bas51
-0.1
-0.0
+0.1
+0.4
-0.1
phage
Bas38
-0.3
+0.2
-0.0
+0.2
+0.2
phage
Bas48
-0.1
+0.3
-0.0
+0.1
+0.0
phage
RB68
-0.2
+0.0
+0.1
+0.1
+0.3
carbon source
D-Glucose
+0.1
+0.0
+0.1
+0.2
+0.1
carbon source
Casamino-acids
+0.0
-0.0
-0.0
+0.2
+0.4
phage
Bas38
-0.1
+0.2
+0.1
+0.2
+0.3
carbon source
Casamino-acids
+0.2
-0.0
+0.1
+0.3
+0.3
phage
Phi92
+0.3
+0.1
+0.3
-0.1
+0.3
phage
Bas55
+0.3
-0.0
+0.2
+0.1
+0.3
carbon source
Sodium-DL-Lactate
+0.1
+0.0
+0.1
+0.3
+0.4
phage
TP7
+0.3
+0.0
+0.2
+0.0
+0.7
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