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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
yecM and cutC are separated by 13 nucleotides
cutC and torY are separated by 386 nucleotides
torY and torZ are separated by 24 nucleotides
torZ and cmoB are separated by 34 nucleotides
HEPCGN_04605: yecM - VOC family protein, at 803,218 to 803,784
yecM
HEPCGN_04610: cutC - copper homeostasis protein CutC, at 803,798 to 804,544
cutC
HEPCGN_04620: torY - Cytochrome c-type protein TorY, at 804,931 to 806,031
torY
HEPCGN_04625: torZ - trimethylamine N-oxide reductase TorZ, at 806,056 to 808,485
torZ
HEPCGN_04630: cmoB - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 808,520 to 809,491
cmoB
Group
Condition
HEPCGN
_04605
HEPCGN
_04610
HEPCGN
_04620
HEPCGN
_04625
HEPCGN
_04630
yecM
cutC
torY
torZ
cmoB
phage
TP7
-2.3
-0.1
+0.3
-0.0
-1.6
phage
TP7
-0.1
-1.4
-0.7
+0.1
-1.4
phage
Bas48
-3.0
-0.1
+0.1
+0.2
-0.2
phage
Bas48
-1.5
-0.9
-0.1
+0.1
-0.5
phage
Bas19
-1.6
-0.5
-0.1
+0.0
-0.3
phage
RB23
-1.1
-0.7
-0.1
+0.1
-0.2
phage
RB68
-0.6
-1.1
-0.0
+0.1
+0.0
carbon source
L-Arabinose
-0.5
-0.5
-0.1
+0.1
-0.0
phage
Bas55
-1.3
+0.2
+0.1
+0.2
-0.0
phage
Bas51
+0.1
-0.6
-0.0
-0.1
+0.1
phage
Bas19
-0.5
+0.1
-0.2
+0.1
-0.2
carbon source
L-Arabinose
-0.5
-0.3
+0.3
-0.2
+0.0
phage
RB23
+0.2
-0.1
-0.1
+0.1
-0.6
phage
Bas55
-0.9
+0.5
+0.0
+0.1
-0.1
carbon source
Casamino-acids
-0.4
-0.3
+0.2
+0.1
+0.1
phage
Bas39
-0.4
+0.5
+0.0
-0.0
-0.2
phage
Bas39
-0.3
+0.0
+0.2
-0.1
+0.1
carbon source
D-Glucose
-0.2
-0.0
+0.1
-0.1
+0.2
carbon source
Sodium-DL-Lactate
-0.1
-0.3
+0.2
+0.0
+0.2
no phage control
Control_ECOR38
-0.1
+0.1
-0.0
-0.1
+0.3
carbon source
Casamino-acids
-0.1
+0.6
-0.0
-0.0
-0.2
no phage control
Control_ECOR38
+0.0
-0.0
-0.1
+0.0
+0.4
phage
K20
-0.6
+0.5
+0.2
+0.2
+0.1
phage
Bas38
+0.1
-0.1
+0.4
-0.1
+0.1
phage
K20
-0.3
+0.6
+0.3
+0.1
+0.0
carbon source
Sodium-DL-Lactate
+0.3
+0.3
+0.1
-0.1
+0.2
phage
Bas38
-0.1
+0.6
+0.3
-0.0
+0.3
phage
Phi92
+1.8
-0.2
+0.5
-0.0
+0.5
phage
Phi92
+2.2
-0.4
+0.1
+0.2
+0.6
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