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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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500 nt
tyrP and yecH are separated by 190 nucleotides
yecH and ftnA are separated by 37 nucleotides
ftnA and yecR are separated by 171 nucleotides
yecR and azuC are separated by 263 nucleotides
HEPCGN_04455: tyrP - tyrosine transporter TyrP, at 775,047 to 776,258
tyrP
HEPCGN_04460: yecH - Uncharacterized protein YecH, at 776,449 to 776,688
yecH
HEPCGN_04465: ftnA - non-heme ferritin, at 776,726 to 777,223
ftnA
HEPCGN_04470: yecR - Uncharacterized protein YecR, at 777,395 to 777,718
yecR
HEPCGN_04475: azuC - stress response protein AzuC, at 777,982 to 778,068
azuC
Group
Condition
HEPCGN
_04455
HEPCGN
_04460
HEPCGN
_04465
HEPCGN
_04470
HEPCGN
_04475
tyrP
yecH
ftnA
yecR
azuC
phage
K20
+0.1
-0.3
-0.8
-0.0
+0.1
phage
Phi92
+0.4
+0.4
-0.8
+0.2
-1.1
phage
Bas39
-0.0
-0.1
-0.8
+0.1
+0.1
phage
Bas19
-0.1
+0.1
-0.3
-0.3
-0.1
phage
Bas19
+0.2
-0.0
-0.1
+0.0
-0.8
carbon source
L-Arabinose
+0.1
+0.2
-0.0
-0.3
-0.4
no phage control
Control_ECOR38
-0.0
-0.2
-0.1
-0.2
+0.2
carbon source
Sodium-DL-Lactate
+0.1
-0.1
-0.2
-0.1
-0.0
phage
Bas51
-0.3
+0.2
-0.1
+0.0
-0.2
phage
Bas55
+0.2
-0.3
-0.4
+0.0
+0.1
phage
Bas48
+0.1
-0.4
-0.3
-0.1
+0.3
carbon source
L-Arabinose
-0.1
-0.5
+0.2
+0.0
+0.1
carbon source
Casamino-acids
-0.2
+0.2
+0.3
-0.3
-0.3
phage
Bas48
+0.5
-0.1
-0.5
-0.5
+0.4
phage
RB68
-0.0
-0.4
-0.2
+0.2
+0.3
phage
RB23
+0.1
-0.2
-0.6
+0.3
+0.5
phage
TP7
+0.3
-0.6
-0.3
+0.6
+0.1
phage
TP7
-0.2
-0.5
+0.0
+0.1
+0.7
carbon source
Casamino-acids
+0.2
-0.2
+0.2
-0.5
+0.4
carbon source
Sodium-DL-Lactate
+0.1
+0.0
-0.1
+0.4
-0.3
phage
Bas39
+0.0
+0.0
+0.0
+0.2
+0.0
carbon source
D-Glucose
+0.1
+0.1
+0.3
+0.1
-0.3
phage
K20
-0.2
-0.2
-0.4
-0.0
+1.2
phage
RB23
+0.2
+0.2
-0.0
+0.1
+0.0
phage
Phi92
+0.2
-1.1
-0.2
+0.2
+1.6
phage
Bas38
+0.1
+0.0
+0.2
+0.5
+0.1
no phage control
Control_ECOR38
+0.1
+0.1
+0.2
+0.1
+0.6
phage
Bas38
+0.1
+0.4
-0.2
-0.0
+0.6
phage
Bas55
+0.0
+0.6
-0.1
+0.1
+0.6
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