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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Number of genes on each side:
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
HEPCGN_04435 and HEPCGN_04440 are separated by 29 nucleotides
HEPCGN_04440 and xerD are separated by 131 nucleotides
xerD and yecA are separated by 356 nucleotides
yecA and tyrP are separated by 49 nucleotides
HEPCGN_04435: HEPCGN_04435 - Putative transmembrane protein, at 771,941 to 772,591
_04435
HEPCGN_04440: HEPCGN_04440 - DUF2511 domain-containing protein, at 772,621 to 772,968
_04440
HEPCGN_04445: xerD - integrase, at 773,100 to 773,975
xerD
HEPCGN_04450: yecA - UPF0149 family protein YecA, at 774,332 to 774,997
yecA
HEPCGN_04455: tyrP - tyrosine transporter TyrP, at 775,047 to 776,258
tyrP
Group
Condition
HEPCGN
_04435
HEPCGN
_04440
HEPCGN
_04445
HEPCGN
_04450
HEPCGN
_04455
xerD
yecA
tyrP
no phage control
Control_ECOR38
-0.1
-0.4
-0.1
-0.1
-0.0
carbon source
L-Arabinose
-0.3
+0.0
-0.1
-0.2
-0.1
carbon source
D-Glucose
-0.5
-0.0
+0.2
-0.2
+0.1
carbon source
Casamino-acids
-0.1
-0.1
-0.0
-0.0
-0.2
phage
RB23
-0.0
-0.4
-0.3
+0.2
+0.2
phage
Bas55
+0.3
-0.7
+0.0
+0.1
+0.0
phage
Bas55
-0.0
-0.4
-0.2
+0.3
+0.2
phage
K20
+0.5
-0.6
+0.0
-0.2
+0.1
phage
Bas51
+0.2
+0.2
+0.0
-0.2
-0.3
phage
TP7
-0.3
-0.1
+0.4
+0.2
-0.2
phage
RB23
+0.3
-0.3
+0.1
-0.3
+0.1
phage
Bas48
+0.2
-0.3
-0.2
-0.3
+0.5
phage
Bas38
-0.1
-0.3
+0.2
+0.1
+0.1
phage
Bas39
-0.1
+0.1
-0.1
+0.1
+0.0
phage
Bas39
+0.1
+0.2
-0.0
-0.2
-0.0
carbon source
Sodium-DL-Lactate
-0.1
+0.3
-0.1
-0.0
+0.1
no phage control
Control_ECOR38
+0.0
+0.5
-0.2
-0.1
+0.1
phage
Bas38
+0.2
-0.1
-0.1
+0.2
+0.1
phage
Bas19
+0.0
-0.5
+0.2
+0.4
+0.2
phage
K20
+0.4
-0.1
-0.2
+0.4
-0.2
carbon source
Sodium-DL-Lactate
+0.0
+0.1
-0.0
+0.3
+0.1
phage
Phi92
-0.2
-0.1
+0.1
+0.3
+0.4
carbon source
L-Arabinose
+0.1
-0.0
+0.4
-0.1
+0.1
phage
Bas19
+0.2
-0.1
+0.1
+0.3
-0.1
phage
RB68
+0.6
-0.3
+0.2
+0.0
-0.0
phage
Phi92
+0.1
-0.3
+0.5
+0.3
+0.2
carbon source
Casamino-acids
+0.2
+0.2
+0.0
+0.2
+0.2
phage
Bas48
-0.1
+0.2
+0.4
+0.3
+0.1
phage
TP7
+0.8
-0.3
+0.4
+0.4
+0.3
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