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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
HEPCGN_04320 and HEPCGN_04325 are separated by 45 nucleotides
HEPCGN_04325 and HEPCGN_04330 are separated by 23 nucleotides
HEPCGN_04330 and HEPCGN_04335 are separated by 154 nucleotides
HEPCGN_04335 and HEPCGN_04340 overlap by 1 nucleotides
HEPCGN_04320: HEPCGN_04320 - terminase, at 755,728 to 756,528
_04320
HEPCGN_04325: HEPCGN_04325 - phage major capsid protein, P2 family, at 756,574 to 757,626
_04325
HEPCGN_04330: HEPCGN_04330 - phage capsid protein, at 757,650 to 758,486
_04330
HEPCGN_04335: HEPCGN_04335 - oxidoreductase, at 758,641 to 760,392
_04335
HEPCGN_04340: HEPCGN_04340 - phage portal protein, at 760,392 to 761,438
_04340
Group
Condition
HEPCGN
_04320
HEPCGN
_04325
HEPCGN
_04330
HEPCGN
_04335
HEPCGN
_04340
phage
Bas39
-1.0
-0.2
-0.4
+0.1
-0.0
phage
Bas55
-0.6
-0.3
+0.0
-0.3
-0.3
phage
Bas39
-1.0
-0.2
-0.3
+0.1
+0.1
phage
K20
-0.4
-0.2
-0.3
-0.3
-0.1
phage
RB68
-0.6
-0.1
-0.2
-0.3
-0.1
phage
Bas38
-0.8
-0.6
-0.3
+0.2
+0.1
phage
Phi92
-0.8
-0.2
+0.3
-0.3
-0.2
phage
Bas55
-0.6
-0.0
-0.1
-0.0
-0.4
phage
Bas51
-0.7
-0.4
-0.2
+0.2
+0.0
phage
K20
-0.7
-0.1
+0.1
-0.0
-0.4
no phage control
Control_ECOR38
-0.9
-0.0
-0.3
+0.1
+0.1
phage
TP7
-0.5
-0.5
+0.4
-0.0
-0.4
no phage control
Control_ECOR38
-0.8
-0.3
+0.0
+0.2
+0.0
phage
Bas19
-0.6
-0.4
+0.2
-0.3
+0.1
carbon source
Sodium-DL-Lactate
+0.0
+0.2
-0.5
-0.3
-0.3
phage
Bas48
-0.5
-0.5
-0.1
+0.2
+0.0
phage
RB23
-0.6
-0.5
+0.3
+0.0
-0.0
phage
Bas48
-0.4
-0.2
-0.2
+0.1
-0.1
phage
Bas38
-0.9
-0.2
+0.1
+0.2
+0.2
phage
Bas19
-0.5
-0.1
+0.1
+0.2
-0.4
phage
RB23
-0.5
-0.2
+0.3
+0.0
-0.1
phage
Phi92
-0.7
+0.2
+0.1
-0.1
-0.1
carbon source
Sodium-DL-Lactate
+0.0
-0.1
-0.1
-0.1
-0.1
carbon source
L-Arabinose
-0.1
-0.2
-0.1
-0.0
+0.1
carbon source
D-Glucose
-0.4
+0.2
-0.2
-0.1
+0.2
carbon source
L-Arabinose
+0.0
+0.1
-0.1
+0.0
-0.2
carbon source
Casamino-acids
+0.0
-0.0
+0.1
-0.0
-0.1
phage
TP7
-0.6
-0.3
+0.3
+0.2
+0.3
carbon source
Casamino-acids
-0.2
+0.1
+0.3
+0.0
-0.0
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