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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
ybtX and ybtS are separated by 27 nucleotides
ybtS and HEPCGN_03600 are separated by 193 nucleotides
HEPCGN_03600 and Asn_trna are separated by 161 nucleotides
Asn_trna and mtfA are separated by 100 nucleotides
HEPCGN_03590: ybtX - putative signal transducer, at 640,794 to 642,074
ybtX
HEPCGN_03595: ybtS - salicylate synthase Irp9, at 642,102 to 643,406
ybtS
HEPCGN_03600: HEPCGN_03600 - integrase, at 643,600 to 644,862
_03600
HEPCGN_03605: Asn_trna - tRNA-Asn(gtt), at 645,024 to 645,099
_trna
HEPCGN_03610: mtfA - DgsA anti-repressor MtfA, at 645,200 to 645,997
mtfA
Group
Condition
HEPCGN
_03590
HEPCGN
_03595
HEPCGN
_03600
HEPCGN
_03605
HEPCGN
_03610
ybtX
ybtS
Asn_trna
mtfA
phage
TP7
-0.3
+0.0
-0.1
N.D.
-0.3
phage
Bas19
-0.4
-0.1
-0.1
N.D.
-0.1
carbon source
D-Glucose
+0.1
-0.0
-0.2
N.D.
-0.2
phage
Bas48
-0.3
-0.2
-0.0
N.D.
+0.3
phage
Bas19
-0.3
+0.0
+0.3
N.D.
-0.2
phage
Phi92
-0.1
-0.1
+0.4
N.D.
-0.4
phage
Bas39
-0.1
-0.0
-0.2
N.D.
+0.1
carbon source
Casamino-acids
-0.1
-0.1
-0.1
N.D.
+0.1
carbon source
Sodium-DL-Lactate
+0.0
-0.0
-0.2
N.D.
+0.1
phage
Bas39
+0.1
+0.1
+0.0
N.D.
-0.2
phage
Bas55
-0.1
-0.1
+0.1
N.D.
+0.1
phage
RB23
-0.2
-0.0
+0.2
N.D.
+0.0
phage
Bas51
+0.0
+0.0
-0.1
N.D.
+0.0
carbon source
Sodium-DL-Lactate
-0.1
+0.0
+0.0
N.D.
+0.1
phage
RB23
-0.3
+0.1
+0.2
N.D.
+0.0
phage
Bas55
-0.0
-0.1
+0.1
N.D.
+0.1
carbon source
L-Arabinose
+0.1
+0.1
+0.1
N.D.
-0.2
no phage control
Control_ECOR38
+0.1
+0.0
-0.1
N.D.
+0.1
phage
Bas38
+0.0
+0.1
+0.0
N.D.
-0.0
carbon source
Casamino-acids
+0.1
+0.1
-0.2
N.D.
+0.1
phage
Bas48
-0.0
-0.1
+0.1
N.D.
+0.2
no phage control
Control_ECOR38
+0.2
+0.1
+0.0
N.D.
-0.0
phage
TP7
-0.2
-0.1
+0.2
N.D.
+0.3
phage
Bas38
+0.3
+0.0
-0.0
N.D.
+0.0
phage
K20
-0.0
+0.1
+0.3
N.D.
-0.1
phage
K20
+0.0
+0.0
+0.2
N.D.
+0.1
carbon source
L-Arabinose
+0.3
+0.0
-0.0
N.D.
+0.3
phage
Phi92
+0.2
-0.0
+0.3
N.D.
+0.1
phage
RB68
+0.6
-0.0
+0.2
N.D.
-0.1
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