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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
asmA and HEPCGN_02985 are separated by 52 nucleotides
HEPCGN_02985 and HEPCGN_02990 overlap by 11 nucleotides
HEPCGN_02990 and yegH are separated by 74 nucleotides
yegH and wza are separated by 658 nucleotides
HEPCGN_02980: asmA - outer membrane assembly protein AsmA, at 503,752 to 505,605
asmA
HEPCGN_02985: HEPCGN_02985 - transcriptional regulator, at 505,658 to 505,948
_02985
HEPCGN_02990: HEPCGN_02990 - Type II toxin-antitoxin system RelE/ParE family toxin, at 505,938 to 506,276
_02990
HEPCGN_02995: yegH - UPF0053 protein YegH, at 506,351 to 507,934
yegH
HEPCGN_03000: wza - polysaccharide export protein Wza, at 508,593 to 509,732
wza
Group
Condition
HEPCGN
_02980
HEPCGN
_02985
HEPCGN
_02990
HEPCGN
_02995
HEPCGN
_03000
asmA
yegH
wza
phage
TP7
-3.8
-3.4
+0.4
+0.6
+0.3
phage
Bas48
-1.6
-3.5
+0.1
-0.1
+0.1
phage
Bas48
-1.7
-3.4
-0.1
-0.0
+0.1
phage
RB23
-4.1
-1.2
+0.3
+0.3
+0.2
phage
TP7
-3.1
-1.8
+0.3
+0.3
-0.0
phage
Bas19
-4.0
+1.2
-0.3
+0.3
-0.1
carbon source
L-Arabinose
-0.5
-1.5
-0.2
-0.2
-0.1
phage
RB23
-2.7
+0.6
-0.1
+0.0
-0.2
phage
Bas19
-2.9
+0.3
+0.2
+0.1
-0.1
phage
RB68
-0.7
-1.4
+0.2
+0.1
-0.1
phage
K20
-0.8
-0.8
-0.1
-0.1
-0.0
phage
K20
-0.9
-0.6
+0.1
+0.0
-0.1
phage
Bas55
-0.0
-1.2
-0.4
+0.2
-0.1
carbon source
Sodium-DL-Lactate
+0.2
-0.6
-0.6
-0.2
-0.2
carbon source
Casamino-acids
-0.3
-1.3
+0.3
-0.0
+0.0
phage
Bas39
-0.1
-0.5
-0.0
-0.2
+0.1
carbon source
Sodium-DL-Lactate
-0.1
-0.7
-0.1
+0.1
+0.1
carbon source
L-Arabinose
+0.0
-0.6
-0.3
+0.2
+0.0
phage
Bas38
-0.1
-0.5
+0.1
+0.1
-0.0
phage
Bas39
-0.1
-0.6
+0.1
+0.1
+0.1
phage
Bas55
+0.1
-0.9
+0.3
+0.2
-0.0
phage
Bas51
+0.0
-0.1
+0.1
-0.2
+0.0
no phage control
Control_ECOR38
-0.2
-0.2
+0.1
+0.0
+0.2
phage
Bas38
+0.0
-0.4
+0.3
+0.0
+0.3
carbon source
Casamino-acids
-0.2
+0.6
-0.1
+0.2
-0.1
no phage control
Control_ECOR38
-0.1
+0.2
-0.0
+0.2
+0.0
carbon source
D-Glucose
-0.1
+0.5
+0.1
-0.0
+0.1
phage
Phi92
+2.0
-1.4
-0.0
+0.0
+0.1
phage
Phi92
+2.0
-1.6
+0.3
+0.2
-0.2
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