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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
HEPCGN_02405 and quuD are separated by 17 nucleotides
quuD and ompC are separated by 187 nucleotides
ompC and HEPCGN_02420 are separated by 510 nucleotides
HEPCGN_02420 and Ile2_trna are separated by 40 nucleotides
HEPCGN_02405: HEPCGN_02405 - DUF968 domain-containing protein, at 392,036 to 393,025
_02405
HEPCGN_02410: quuD - antitermination protein QuuD, at 393,043 to 393,426
quuD
HEPCGN_02415: ompC - phosphoporin PhoE, at 393,614 to 394,696
ompC
HEPCGN_02420: HEPCGN_02420 - Site-specific DNA-methyltransferase, at 395,207 to 395,485
_02420
HEPCGN_02425: Ile2_trna - tRNA-Ile2(cat), at 395,526 to 395,601
_trna
Group
Condition
HEPCGN
_02405
HEPCGN
_02410
HEPCGN
_02415
HEPCGN
_02420
HEPCGN
_02425
quuD
ompC
Ile2_trna
phage
Phi92
-1.1
-0.1
-1.4
+1.3
N.D.
no phage control
Control_ECOR38
-0.8
-0.0
-0.2
-0.1
N.D.
phage
TP7
-0.2
-0.6
-0.7
+0.5
N.D.
carbon source
Casamino-acids
-0.6
-0.1
-0.2
+0.0
N.D.
phage
Phi92
+0.7
-0.2
-1.4
-0.0
N.D.
phage
Bas48
+0.0
-0.5
-0.2
+0.1
N.D.
carbon source
L-Arabinose
-0.6
+0.3
-0.1
-0.0
N.D.
phage
Bas38
+0.0
+0.1
-0.2
-0.2
N.D.
no phage control
Control_ECOR38
-0.2
-0.1
-0.2
+0.3
N.D.
carbon source
Casamino-acids
-0.1
-0.3
-0.1
+0.3
N.D.
phage
Bas39
+0.1
-0.1
-0.3
+0.1
N.D.
phage
RB23
-0.2
-0.0
+0.0
+0.1
N.D.
phage
RB23
-0.2
-0.3
-0.2
+0.7
N.D.
carbon source
L-Arabinose
+0.0
+0.1
-0.2
-0.0
N.D.
phage
Bas19
+0.2
-0.1
+0.1
-0.2
N.D.
phage
Bas55
-0.0
+0.0
+0.1
-0.1
N.D.
carbon source
Sodium-DL-Lactate
+0.1
+0.0
-0.0
-0.0
N.D.
phage
TP7
+0.2
+0.2
-0.5
+0.1
N.D.
phage
Bas39
+0.2
-0.1
-0.1
+0.1
N.D.
phage
Bas51
+0.2
+0.1
-0.2
+0.1
N.D.
phage
K20
+0.3
+0.1
+0.1
-0.2
N.D.
phage
Bas55
+0.9
-0.3
+0.0
-0.2
N.D.
carbon source
Sodium-DL-Lactate
+0.4
-0.3
+0.1
+0.2
N.D.
phage
Bas48
+0.7
+0.1
+0.1
-0.4
N.D.
carbon source
D-Glucose
+0.3
+0.1
-0.1
+0.2
N.D.
phage
Bas38
+0.4
-0.1
+0.1
+0.1
N.D.
phage
Bas19
+0.6
+0.1
+0.1
-0.1
N.D.
phage
K20
+0.3
+0.4
-0.0
+0.6
N.D.
phage
RB68
+1.2
+0.2
-0.0
+0.2
N.D.
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