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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
mntS and mntR are separated by 185 nucleotides
mntR and ybiR overlap by 4 nucleotides
ybiR and ldtB are separated by 58 nucleotides
ldtB and ybiT are separated by 218 nucleotides
HEPCGN_01860: mntS - manganase accumulation protein MntS, at 296,398 to 296,526
mntS
HEPCGN_01865: mntR - manganese-binding transcriptional regulator MntR, at 296,712 to 297,179
mntR
HEPCGN_01870: ybiR - Inner membrane protein YbiR, at 297,176 to 298,294
ybiR
HEPCGN_01875: ldtB - L,D-transpeptidase, at 298,353 to 299,273
ldtB
HEPCGN_01880: ybiT - ABC-F family ATPase, at 299,492 to 301,084
ybiT
Group
Condition
HEPCGN
_01860
HEPCGN
_01865
HEPCGN
_01870
HEPCGN
_01875
HEPCGN
_01880
mntS
mntR
ybiR
ldtB
ybiT
phage
Bas48
+0.2
-0.1
-0.4
-3.8
+0.4
phage
Phi92
+0.0
-0.2
-0.2
-3.6
+0.3
phage
Phi92
+0.3
-0.0
+0.1
-3.0
+0.4
phage
Bas48
-0.3
+0.5
+0.2
-2.5
+0.4
phage
TP7
-0.4
+0.6
-0.0
-2.2
+0.5
phage
RB23
-0.6
+0.2
-0.3
-0.0
-0.1
phage
TP7
+0.3
+0.4
-0.1
-2.0
+0.4
phage
Bas55
-0.2
-0.0
-0.3
-0.2
+0.0
phage
Bas39
+0.0
+0.1
-0.1
-0.6
+0.0
phage
Bas38
+0.2
-0.4
-0.1
-0.4
+0.1
phage
Bas51
-0.3
-0.0
+0.0
-0.4
+0.1
phage
Bas19
+0.0
-0.0
-0.1
-0.6
+0.3
phage
RB68
+0.5
-0.5
-0.3
+0.1
-0.0
no phage control
Control_ECOR38
+0.5
-0.1
-0.2
-0.5
+0.0
phage
K20
+0.1
+0.1
-0.1
-0.4
+0.2
phage
Bas39
+0.5
+0.2
-0.1
-0.7
+0.1
phage
Bas38
+0.4
+0.1
-0.1
-0.5
+0.1
phage
Bas19
+0.1
+0.0
-0.2
-0.2
+0.3
carbon source
Casamino-acids
-0.0
+0.2
-0.0
-0.1
-0.0
carbon source
Sodium-DL-Lactate
+0.1
+0.1
-0.1
+0.3
-0.2
no phage control
Control_ECOR38
+0.3
+0.1
+0.1
-0.4
+0.1
phage
Bas55
+0.4
+0.3
-0.3
-0.4
+0.3
carbon source
Sodium-DL-Lactate
+0.6
+0.4
+0.0
-0.4
-0.1
carbon source
D-Glucose
+0.3
-0.1
+0.1
-0.0
+0.2
carbon source
L-Arabinose
+1.1
-0.2
-0.1
-0.0
+0.0
phage
RB23
+0.3
+0.2
+0.2
-0.3
+0.4
carbon source
Casamino-acids
+0.4
+0.2
+0.1
+0.1
-0.0
carbon source
L-Arabinose
+0.5
+0.2
-0.1
+0.1
-0.0
phage
K20
+0.5
+0.2
-0.0
+0.3
+0.3
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