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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR38
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Top 29 experiments (either direction), sorted by average fitness
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500 nt
ybhR and ybhS are separated by 10 nucleotides
ybhS and lptB overlap by 8 nucleotides
lptB and hlyD overlap by 8 nucleotides
hlyD and cecR are separated by 2 nucleotides
HEPCGN_01725: ybhR - putative multidrug ABC transporter permease YbhR, at 266,699 to 267,805
ybhR
HEPCGN_01730: ybhS - putative multidrug ABC transporter permease YbhS, at 267,816 to 268,949
ybhS
HEPCGN_01735: lptB - LPS export ABC transporter ATP-binding protein, at 268,942 to 270,678
lptB
HEPCGN_01740: hlyD - secretion protein HlyD, at 270,671 to 271,666
hlyD
HEPCGN_01745: cecR - DNA-binding transcriptional regulator CecR, at 271,669 to 272,340
cecR
Group
Condition
HEPCGN
_01725
HEPCGN
_01730
HEPCGN
_01735
HEPCGN
_01740
HEPCGN
_01745
ybhR
ybhS
lptB
hlyD
cecR
carbon source
Sodium-DL-Lactate
+0.1
-0.4
-0.1
-0.3
-0.2
phage
Phi92
-0.1
-0.3
-0.3
-0.3
+0.1
phage
Bas48
+0.3
-0.7
-0.0
-0.1
-0.1
phage
K20
+0.1
-0.7
-0.0
-0.1
+0.2
phage
Bas38
-0.2
+0.1
-0.2
-0.0
-0.1
phage
K20
+0.0
-0.7
-0.0
+0.1
+0.2
phage
Bas55
-0.0
-0.2
-0.2
-0.2
+0.4
carbon source
L-Arabinose
-0.0
-0.1
+0.2
-0.4
+0.1
no phage control
Control_ECOR38
-0.3
+0.3
-0.2
-0.2
+0.0
phage
TP7
-0.2
-0.6
+0.3
+0.0
+0.3
phage
Bas39
-0.2
+0.1
-0.1
+0.1
+0.0
carbon source
L-Arabinose
+0.0
-0.1
+0.0
-0.0
-0.0
phage
Bas39
-0.2
+0.2
+0.1
+0.1
-0.2
phage
RB23
+0.1
-0.4
+0.1
-0.1
+0.1
no phage control
Control_ECOR38
-0.1
+0.2
-0.2
+0.1
-0.0
phage
Bas55
+0.1
-0.1
-0.1
+0.1
+0.1
phage
Bas19
+0.1
+0.1
-0.2
-0.3
+0.3
phage
RB23
+0.3
-0.2
-0.1
-0.1
+0.2
phage
Bas19
+0.4
-0.2
+0.1
-0.0
-0.1
carbon source
Casamino-acids
-0.0
+0.0
-0.1
+0.2
+0.1
phage
RB68
+0.2
+0.1
-0.4
+0.1
+0.2
carbon source
D-Glucose
+0.0
+0.1
-0.1
+0.1
+0.2
phage
Phi92
+0.2
+0.0
-0.1
-0.2
+0.4
phage
Bas51
+0.1
+0.2
-0.1
+0.1
-0.0
phage
Bas38
+0.0
+0.1
+0.0
+0.1
+0.1
carbon source
Sodium-DL-Lactate
+0.1
+0.2
+0.1
+0.1
+0.0
phage
Bas48
+0.0
+0.3
+0.1
+0.1
+0.1
carbon source
Casamino-acids
+0.2
+0.3
+0.0
+0.2
+0.1
phage
TP7
+0.2
+0.2
+0.1
+0.1
+0.5
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