Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05055	PS417_05060	PS417_05065	PS417_05070	PS417_05075
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.1	-1.7	+0.2	-3.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.1	-0.7	-0.3	-3.6
stress	Gentamicin 0.008 mg/ml	-0.5	+0.1	-0.9	-0.1	-0.7
seeds	Growth on radish seeds for 72 hours	-0.7	+0.2	-0.7	-0.5	-0.0
agar plate interaction control	Taped volatile agar plate with no fungus	-0.6	+0.0	-0.4	-0.4	-0.4
stress	Cisplatin 0.01 mg/ml	-2.0	+0.2	-0.3	-0.0	+0.5
soil	soil sample 7; outgrowth in LB	+0.3	-0.0	-1.8	+0.4	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	-0.1	-1.2	+0.1	+0.1
soil	soil sample 4; outgrowth in LB	-1.2	-0.4	+0.0	+0.5	-0.2
motility	inner cut, LB soft agar motility assay	+0.1	+0.2	-1.3	-0.2	-0.0
carbon source	L-Valine (C)	+0.7	-0.2	-1.3	-0.3	+0.1
carbon source	L-Valine (C)	-1.0	+0.1	-0.2	-0.1	+0.6
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.6	-0.0	-0.9	+0.1	-0.3
solid stress	Fraxetin 3 mM; solid stress	+0.3	+0.0	+0.5	-0.5	-0.6
stress	Choline Lysine 25 mM	-0.4	+0.1	+1.1	-0.1	-0.5
stress	Cobalt chloride 0.16 mM	+0.2	-0.2	-0.8	-0.6	+1.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.6	+0.4	+0.4	+0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.1	+1.1	-0.0	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.0	+0.6	+0.7	-0.0
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.0	-0.0	+0.4	+1.1	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	+0.6	+0.7	-0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.3	+1.5	+0.0	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3	-0.2	+0.9	+0.5	-0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.1	-0.4	+0.6	+1.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.1	+0.9	-0.0	-0.2
root	root sample 6; outgrowth in LB	+0.3	+0.3	-0.2	+1.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	+0.7	+1.4	+0.1	-0.1
soil	soil sample 3; outgrowth in LB	+0.2	-0.2	+0.9	+0.7	+0.1
soil	soil sample 5; outgrowth in LB	-0.2	+0.0	+0.7	+1.0	+0.2
seeds	Growth on radish seeds for 72 hours	+0.4	-0.1	+1.3	+0.2	-0.0