Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_05030	PS417_05035	PS417_05040	PS417_05045	PS417_05050
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+0.1	-1.1	+0.1	-0.8
carbon source	L-Valine (C)	+0.1	-0.8	-0.1	-1.0	+0.3
motility	inner cut, LB soft agar motility assay	+0.4	-0.6	+0.0	-0.5	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	+0.4	-0.6	-0.7	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.3	-0.5	-0.3	-0.8	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	+0.3	-0.3	-0.4	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.0	+0.8	-0.5	-0.6
carbon source	L-Valine (C)	+0.4	-0.4	-0.7	+0.6	-0.5
solid stress	80% Methanol 1 mM; solid stress	-0.1	+0.2	+0.6	-0.5	-0.6
phage	P. simiae Grant Run MOI 0.1	-0.0	-0.1	-0.5	+1.0	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.1	+0.9	-0.6	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.6	+0.9	-0.3	-0.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.0	-0.7	+0.7	-0.5
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	+0.0	+0.8	-0.2	-0.7	+0.3
phage	P. simiae Grant Run MOI 10	+0.0	-1.1	+0.4	+0.4	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	+1.1	+0.1	-0.6	-0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	+1.2	-1.1	+0.5	+0.3
phage	Wcs_0.1	+0.2	+0.4	+0.7	+0.8	-0.7
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.1	+1.1	-0.2	+0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	+2.2	+0.3	-0.1	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.1	+0.8	-0.1	+1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.5	+0.7	+0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.6	+1.0	+0.0	-0.1
soil	soil sample 7; outgrowth in LB	+0.2	+0.4	+0.5	+1.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.6	+0.1	+1.0	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.1	+0.0	+0.6	+0.8
soil	soil sample 6; outgrowth in LB	+0.1	+0.5	+0.3	+0.8	+0.5
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.2	+1.2	+0.6	+1.2	+0.1
root	root sample 6; outgrowth in LB	+0.5	+1.7	+0.8	+0.7	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	+1.1	+0.6	-0.1	+2.8