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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF992 and GFF993 are separated by 34 nucleotides
GFF993 and GFF994 are separated by 18 nucleotides
GFF994 and GFF995 overlap by 4 nucleotides
GFF995 and GFF996 are separated by 119 nucleotides
GFF992 - Tol-Pal system protein TolQ, at 986,627 to 987,346
GFF992
GFF993 - Tol biopolymer transport system, TolR protein, at 987,381 to 987,851
GFF993
GFF994 - TolA protein, at 987,870 to 988,841
GFF994
GFF995 - Tol-Pal system beta propeller repeat protein TolB, at 988,838 to 990,172
GFF995
GFF996 - Tol-Pal system peptidoglycan-associated lipoprotein PAL, at 990,292 to 990,804
GFF996
Group
Condition
GFF992
GFF993
GFF994
GFF995
GFF996
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.3
+0.0
-0.0
-0.1
-0.8
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.6
-0.5
+0.0
-0.6
+0.4
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.5
-0.2
-0.0
-0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.3
-0.4
-0.1
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
+0.4
-0.0
-0.9
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
+0.0
-0.2
-0.3
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
-0.3
-0.3
-0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
+0.5
-0.4
-0.7
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
-0.1
-0.3
-0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
-0.1
-0.1
+0.1
-0.5
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
-0.0
-0.1
-0.2
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.3
-0.2
-0.1
+0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
+0.1
+0.0
-0.2
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
-0.2
-0.2
-0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
+0.0
+0.1
-0.3
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.1
-0.0
-0.3
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.0
-0.1
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.3
+0.3
+0.0
-0.1
+0.1
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