Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_05000 and PS417_05005 are separated by 51 nucleotidesPS417_05005 and PS417_05010 are separated by 1 nucleotidesPS417_05010 and PS417_05015 are separated by 120 nucleotidesPS417_05015 and PS417_05020 are separated by 3 nucleotides PS417_05000: PS417_05000 - TonB-dependent receptor, at 1,110,694 to 1,113,069 _05000 PS417_05005: PS417_05005 - penicillin-binding protein, at 1,113,121 to 1,114,566 _05005 PS417_05010: PS417_05010 - IclR family transcriptional regulator, at 1,114,568 to 1,115,347 _05010 PS417_05015: PS417_05015 - homogentisate 1,2-dioxygenase, at 1,115,468 to 1,116,751 _05015 PS417_05020: PS417_05020 - fumarylacetoacetase, at 1,116,755 to 1,118,041 _05020
Group Condition PS417_05000 PS417_05005 PS417_05010 PS417_05015 PS417_05020
soil soil sample 5; outgrowth in LB +0.4 +0.6 -4.6 -0.5 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB +0.1 +0.3 -3.2 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.4 -2.2 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.1 -1.7 -0.4 N.D.
soil soil sample 3; outgrowth in LB -0.1 +0.3 -1.9 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.4 -1.4 -0.2 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.1 -0.3 -1.5 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.0 +0.1 -2.1 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 -0.5 -0.8 -0.5 N.D.
phage P. simiae ORA MOI 10 +0.1 -0.5 -1.2 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.1 -2.2 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.2 -1.6 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.0 -1.5 -0.2 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.1 +0.3 +0.2 -2.1 N.D.
carbon source 2-Deoxy-D-Ribose (C) +0.1 +0.1 -1.6 +0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 +0.3 -1.4 -0.2 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.1 +0.1 +0.3 -1.6 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.1 +0.2 +0.6 -1.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 +0.1 -1.3 +0.5 N.D.
seeds Growth on radish seeds for 72 hours -0.3 +0.2 -1.1 +0.6 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 +0.3 -1.1 +0.8 N.D.
stress Nalidixic 0.015 mg/ml +0.2 +0.4 -1.1 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.0 -1.3 +0.9 N.D.
phage JP1 MOI 1 +0.1 +0.3 -1.0 +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 +0.6 -0.8 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.4 +0.9 -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.2 +0.7 +0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.3 +1.8 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.7 +0.9 +0.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 +0.1 +1.8 +0.4 N.D.
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