Fitness for 5 genes in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

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500 ntGFF983 and GFF984 are separated by 5 nucleotidesGFF984 and GFF985 are separated by 118 nucleotidesGFF985 and GFF986 are separated by 12 nucleotidesGFF986 and GFF987 overlap by 4 nucleotides GFF983 - Aspartate racemase (EC 5.1.1.13), at 167,678 to 168,412 GFF983 GFF984 - LysR family transcriptional regulator QseA, at 168,418 to 169,326 GFF984 GFF985 - Isoaspartyl dipeptidase (EC 3.4.19.5) @ Asp-X dipeptidase, at 169,445 to 170,617 GFF985 GFF986 - Putative membrane protein, at 170,630 to 171,091 GFF986 GFF987 - FIG00637915: hypothetical protein, at 171,088 to 171,759 GFF987
Group Condition GFF983 GFF984 GFF985 GFF986 GFF987
phage LB_plus_SM_buffer with FelixO1_phage 0.5 MOI +0.0 +0.1 +0.1 -0.4 -2.5
phage LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI -0.4 -0.1 -0.5 -0.1 -0.9
phage LB_plus_SM_buffer with P22_phage 15 MOI +0.3 -1.2 -0.2 +0.3 -0.9
nophagecontrol No phage control -0.1 -0.1 -0.4 -0.2 -0.6
phage Br60_phage 15 MOI -0.1 +0.1 -0.7 +0.0 -0.7
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.1 +0.2 -0.7 -0.1 -0.5
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.0 +0.0 -0.4 +0.1 -0.9
lb_plus_sm_buffer LB_plus_SM_buffer -0.1 +0.0 +0.3 +0.1 -1.2
phage phi19h1_phage 15 MOI -0.0 +0.3 -0.8 +0.1 -0.4
phage LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI -0.0 -0.2 -0.5 +0.4 -0.3
phage 6F2_phage 15 MOI -0.1 -0.1 -0.4 -0.1 +0.6
phage LB_plus_SM_buffer with 6D2_phage 15 MOI -0.1 -0.1 -0.5 +0.1 +0.5
phage LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI +0.3 +0.2 +0.0 +0.3 -0.4
phage LB_plus_SM_buffer with 8C2_phage 15 MOI -0.1 -0.4 +0.4 +0.2 +0.4
phage LB_plus_SM_buffer with ES18h1_phage 0.75 MOI -0.0 -0.6 +0.4 +0.5 +0.4
phage 6H2_phage 10 MOI; agar plate assay +0.1 -0.3 +0.4 +0.0 +0.5
lb_plus_sm_buffer LB_plus_SM_buffer +0.1 +0.1 +0.7 +0.2 -0.2
phage LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI -0.0 +0.2 +0.2 -0.2 +0.8
phage LB_plus_SM_buffer with phi19h1_phage 0.1875 MOI -0.2 +0.2 +0.1 +0.2 +0.6
phage LB_plus_SM_buffer with phi19h1_phage 0.01875 MOI +0.1 -0.2 +0.1 +0.1 +0.9
phage LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI +0.2 +0.1 -0.4 +0.6 +0.6
phage LB_plus_SM_buffer with 6F2_phage 15 MOI +0.3 -0.1 -0.2 +0.5 +0.7
phage LB_plus_SM_buffer with FelixO1_phage 0.05 MOI -0.0 +0.2 +1.1 +0.2 -0.3
phage LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI -0.0 -0.0 +0.2 +0.7 +0.5
phage LB_plus_SM_buffer with Br60_phage 0.0000005 MOI +0.1 +0.4 +0.4 +0.1 +0.3
phage LB_plus_SM_buffer with S16_phage 15 MOI +0.4 +0.3 -0.3 +0.6 +0.6
phage LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI +0.2 +0.1 +0.2 +0.3 +0.9
phage LB_plus_SM_buffer with S16_phage 15 MOI +0.5 +0.7 +0.4 -0.0 +0.2
phage LB_plus_SM_buffer with EIP16_phage 8.75 MOI +0.2 +0.6 +0.2 -0.0 +0.9
phage LB_plus_SM_buffer with 6D2_phage 15 MOI +0.2 +0.2 +0.4 +0.6 +0.6
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