Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_04975	PS417_04980	PS417_04985	PS417_04990	PS417_04995
phage	Wcs_1	-1.0	-0.6	-0.8	+0.5	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.5	+0.2	-0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	-0.5	-0.6	-0.4	+0.4
phage	P. simiae OR Antrim MOI 0.1	-0.8	+0.4	-0.4	-0.4	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	+0.2	+0.1	-0.9	+0.2
carbon source	2'-Deoxyinosine 5 mM (C)	-1.4	+0.5	-0.5	+0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-0.2	+0.8	-0.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	-0.3	+0.7	-1.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.4	-1.0	-0.2	+0.3
phage	P. simiae ORA MOI 10	+0.6	-0.1	-0.8	-0.3	+0.4
seeds	Growth on radish seeds for 72 hours	-0.0	-0.8	+1.0	-0.8	+0.5
phage	P. simiae OR Antrim MOI 10	-0.6	+0.3	+1.0	-0.5	-0.1
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	-0.7	+0.4	-0.6	+0.7	+0.2
soil	soil sample 7; outgrowth in LB	-1.1	-0.3	+0.8	-0.0	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0	+0.2	-0.5	-0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	+0.6	+0.5	+0.0	+0.5
phage	JP1 MOI 10	-0.4	+0.8	-0.3	+0.6	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.4	+0.7	-0.4	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.1	+0.9	-0.7	+0.1
ecofab	LB in EcoFAB_3.5mL	-0.9	+0.4	+0.2	+0.6	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	+0.5	-0.7	+0.4	+0.1
soil	soil sample 5; outgrowth in LB	+0.9	-0.6	-0.5	-0.1	+1.3
stress	methylglyoxal 0.032 vol%	+0.9	-0.4	+0.1	+0.7	-0.1
soil	soil sample 6; outgrowth in LB	+0.4	-0.3	+0.0	+0.6	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.5	-0.1	+1.2	-0.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.7	-0.0	+0.5	+0.4	+1.4
soil	soil sample 3; outgrowth in LB	+0.9	-0.3	-0.1	+0.9	+0.6
soil	soil sample 4; outgrowth in LB	+0.3	-0.4	+1.1	-0.0	+1.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.3	-0.1	+0.3	+0.1	+1.7
root	root sample 6; outgrowth in LB	+0.4	+0.3	+0.7	+0.6	+1.6