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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF981 and GFF982 are separated by 4 nucleotides
GFF982 and GFF983 overlap by 4 nucleotides
GFF983 and GFF984 are separated by 40 nucleotides
GFF984 and GFF985 are separated by 184 nucleotides
GFF981 - Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4), at 299,282 to 300,712
GFF981
GFF982 - Cell division protein ZapE, at 300,717 to 301,817
GFF982
GFF983 - hypothetical protein, at 301,814 to 302,497
GFF983
GFF984 - Protein phosphatase 2C-like, at 302,538 to 303,230
GFF984
GFF985 - Uncharacterized protein SMc04000, at 303,415 to 303,618
GFF985
Group
Condition
GFF981
GFF982
GFF983
GFF984
GFF985
complex community
Community=Locust bean gum; Passage=4
N.D.
-3.6
-0.6
-0.2
N.D.
complex community
Community=Locust bean gum; Passage=4
N.D.
-3.4
-0.3
+0.1
N.D.
complex community
Community=arabino-guar; Passage=4
N.D.
-2.9
-0.5
+0.2
N.D.
complex community
Community=Locust bean gum; Passage=4
N.D.
-3.1
-0.0
-0.0
N.D.
complex community
Community=guar; Passage=4
N.D.
-2.6
-0.5
-0.0
N.D.
complex community
Community=Locust bean gum; Passage=4
N.D.
-3.2
-0.0
+0.2
N.D.
complex community
Community=arabino-guar; Passage=4
N.D.
-3.0
-0.1
+0.2
N.D.
complex community
Community=guar; Passage=4
N.D.
-3.4
+0.5
+0.1
N.D.
complex community
Community=guar; Passage=4
N.D.
-2.6
-0.3
+0.1
N.D.
complex community
Community=arabino-guar; Passage=4
N.D.
-2.6
-0.0
-0.1
N.D.
complex community
Community=Kojac gum; Passage=4
N.D.
-2.9
+0.2
+0.1
N.D.
complex community
Community=guar; Passage=4
N.D.
-2.2
-0.0
-0.2
N.D.
complex community
Community=arabino-guar; Passage=4
N.D.
-2.7
+0.3
+0.1
N.D.
phage
phage_bap4
N.D.
-0.5
-0.9
+0.3
N.D.
phage
phage_bap4
N.D.
-0.8
-0.5
+0.2
N.D.
phage
phage_bap4
N.D.
-0.7
-0.5
+0.3
N.D.
phage
phage_bap4
N.D.
-0.5
-0.3
+0.4
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
+0.5
-0.4
-0.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
N.D.
+0.6
-0.2
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
N.D.
+0.6
-0.2
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
+0.6
-0.4
+0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
N.D.
+0.7
-0.4
+0.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
N.D.
+0.8
-0.2
-0.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
N.D.
+0.7
-0.2
+0.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
N.D.
+0.6
+0.1
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
N.D.
+0.8
-0.1
-0.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
+0.7
+0.2
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
N.D.
+0.6
+0.2
-0.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
N.D.
+0.8
+0.2
-0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
N.D.
+0.7
+0.2
-0.0
N.D.
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