Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_04970	PS417_04975	PS417_04980	PS417_04985	PS417_04990
phage	Wcs_1	N.D.	-1.0	-0.6	-0.8	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.5	-0.6	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.8	+0.2	+0.1	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.8	-0.5	+0.2	-0.4
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-1.4	+0.5	-0.5	+0.0
phage	P. simiae OR Antrim MOI 0.1	N.D.	-0.8	+0.4	-0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.1	-0.2	+0.8	-0.5
soil	soil sample 7; outgrowth in LB	N.D.	-1.1	-0.3	+0.8	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.1	+0.4	-1.0	-0.2
seeds	Growth on radish seeds for 72 hours	N.D.	-0.0	-0.8	+1.0	-0.8
carbon source	L-Valine (C)	N.D.	-0.7	+0.6	-0.6	-0.0
phage	P. simiae ORA MOI 10	N.D.	+0.6	-0.1	-0.8	-0.3
soil	soil sample 5; outgrowth in LB	N.D.	+0.9	-0.6	-0.5	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.3	+0.6	+0.5	+0.0
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	N.D.	-0.7	+0.4	-0.6	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.6	-0.3	+0.7	-1.2
phage	P. simiae OR Antrim MOI 10	N.D.	-0.6	+0.3	+1.0	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.5	-0.4	-0.5	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.9	-0.7	-0.2	+0.3
ecofab	LB in EcoFAB_3.5mL	N.D.	-0.9	+0.4	+0.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+1.0	+0.2	-0.5	-0.3
phage	JP1 MOI 10	N.D.	-0.4	+0.8	-0.3	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	+0.1	+0.9	-0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.6	+0.5	-0.7	+0.4
supernatant control	Vogels_fungal_media 0.1X	N.D.	+0.6	+0.4	-0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	+0.4	+0.7	-0.4
stress	methylglyoxal 0.032 vol%	N.D.	+0.9	-0.4	+0.1	+0.7
soil	soil sample 3; outgrowth in LB	N.D.	+0.9	-0.3	-0.1	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.5	-0.1	+1.2
root	root sample 6; outgrowth in LB	N.D.	+0.4	+0.3	+0.7	+0.6