Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00485	PS417_00490	PS417_00495	PS417_00500	PS417_00505
soil	soil sample 6; outgrowth in LB	-1.1	-0.7	-0.8	-0.1	+0.3
stress	methylglyoxal 0.032 vol%	-0.6	-0.3	-1.1	-0.1	-0.3
carbon source	m-Inositol (C)	-0.6	-0.4	-0.5	-0.2	-0.2
soil	soil sample 3; outgrowth in LB	-0.8	+0.0	-0.7	-0.3	+0.1
seeds	Growth on radish seeds for 72 hours	-0.6	-0.7	-0.2	-0.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	-0.6	-0.4	-0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.3	+0.1	-0.4	+0.2	-0.0
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.3	-0.4	-0.1	+0.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.5	-0.7	-0.6	-0.3	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	-0.6	+0.0	-1.4	-0.0	+0.6
solid stress	Fraxetin 3 mM; solid stress	-0.1	+0.3	-1.1	+0.1	-0.3
supernatant control	Vogels_fungal_media 0.1X	+0.4	-0.7	-0.0	-0.3	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	+0.4	+0.0	-0.1	-0.3
carbon source	acetate (C)	+0.3	-0.6	-0.4	-0.3	+0.2
carbon source	D-Glucosamine Hydrochloride (C)	-1.0	+0.3	-0.1	-0.2	+0.4
phage	P. simiae OR Antrim MOI 1	+1.1	-0.0	-1.1	-0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-0.4	+0.2	+0.2	+0.3
phage	P. simiae ORA MOI 10	+0.4	+0.4	-0.6	-0.1	-0.5
phage	P. simiae OR1 MOI 0.1	+0.5	-1.0	-0.4	+0.3	+0.1
seeds	Growth on radish seeds for 24 hours	-0.7	-0.9	+0.6	+0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	-0.7	+0.1	-0.3	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	-0.4	-0.8	-0.2	+0.7
soil	soil sample 5; outgrowth in LB	+0.0	+0.8	-1.2	-0.2	+0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	+0.5	-0.6	+0.3	-0.3
phage	JP1 MOI 10	+0.4	+0.4	-0.7	-0.1	+0.2
motility	inner cut, LB soft agar motility assay	-0.2	+0.6	-0.3	-0.3	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	+0.6	-0.0	-0.5	-0.4
soil	soil sample 4; outgrowth in LB	+0.6	+0.1	+0.5	-0.2	-0.7
stress	Gentamicin 0.008 mg/ml	-0.4	+0.5	+0.3	-0.3	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+1.0	+0.4	-0.2	+0.6