Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF96 and GFF97 are separated by 120 nucleotidesGFF97 and GFF98 are separated by 412 nucleotidesGFF98 and GFF99 overlap by 1 nucleotidesGFF99 and GFF100 overlap by 4 nucleotides GFF96 - RNA polymerase ECF-type sigma factor, at 109,762 to 110,424 GFF96 GFF97 - Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system, at 110,545 to 123,438 GFF97 GFF98 - Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system, at 123,851 to 124,849 GFF98 GFF99 - KEGG: RNA polymerase sigma-70 factor, ECF subfamily, at 124,849 to 125,409 GFF99 GFF100 - no description, at 125,406 to 126,104 GFF100
Group Condition GFF96 GFF97 GFF98 GFF99 GFF100
complex community Community=Locust bean gum; Passage=4 +0.1 +0.1 N.D. -2.8 -0.0
complex community Community=arabino-guar; Passage=4 +0.5 -0.0 N.D. -3.1 +0.4
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.1 N.D. -1.0 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.6 -0.0 N.D. -0.1 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.4 +0.0 N.D. -0.8 +0.1
complex community Community=arabino-guar; Passage=4 -0.6 -0.0 N.D. +0.3 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 -0.0 N.D. -0.3 -0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.3 -0.0 N.D. -0.2 -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.3 +0.0 N.D. +0.0 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.0 +0.0 N.D. -0.3 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 +0.1 N.D. -0.6 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.4 +0.1 N.D. -0.1 +0.1
complex community Community=arabino-guar; Passage=4 +0.3 +0.0 N.D. +0.2 -0.5
vitamin M9 with Supernatant from Cyptococcus -0.2 -0.0 N.D. +0.3 +0.1
complex community Community=Locust bean gum; Passage=4 +0.1 -0.1 N.D. +0.6 -0.5
complex community Community=Locust bean gum; Passage=4 +0.6 +0.0 N.D. -0.8 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 -0.0 N.D. +0.3 +0.2
phage phage_bap4 +0.4 +0.1 N.D. -0.5 +0.2
complex community Community=guar; Passage=4 -1.3 -0.1 N.D. +1.2 +0.5
complex community Community=Kojac gum; Passage=4 -0.5 -0.2 N.D. +1.3 -0.3
complex community Community=arabino-guar; Passage=4 -0.1 +0.0 N.D. +0.7 -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 +0.1 N.D. +0.4 -0.1
complex community Community=guar; Passage=4 -0.5 -0.1 N.D. +0.8 +0.2
complex community Community=guar; Passage=4 -0.0 +0.1 N.D. +0.6 -0.1
phage phage_bap4 +0.2 -0.0 N.D. +0.7 -0.2
phage phage_bap4 +0.2 -0.0 N.D. +0.6 -0.1
phage phage_bap4 +0.2 +0.0 N.D. +0.2 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 +0.0 N.D. +0.4 +0.2
complex community Community=guar; Passage=4 +0.8 -0.0 N.D. +0.5 -0.5
phage phage_bap4 +0.4 -0.1 N.D. +0.4 +0.0
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