Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04910 and PS417_04915 are separated by 11 nucleotidesPS417_04915 and PS417_04920 are separated by 212 nucleotidesPS417_04920 and PS417_04925 overlap by 11 nucleotidesPS417_04925 and PS417_04930 overlap by 4 nucleotides PS417_04910: PS417_04910 - amino acid ABC transporter permease, at 1,094,069 to 1,095,166 _04910 PS417_04915: PS417_04915 - glutamine ABC transporter ATP-binding protein, at 1,095,178 to 1,095,942 _04915 PS417_04920: PS417_04920 - GntR family transcriptional regulator, at 1,096,155 to 1,096,814 _04920 PS417_04925: PS417_04925 - MFS transporter, at 1,096,804 to 1,098,069 _04925 PS417_04930: PS417_04930 - hypothetical protein, at 1,098,066 to 1,098,704 _04930
Group Condition PS417_04910 PS417_04915 PS417_04920 PS417_04925 PS417_04930
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.1 -3.3 -0.3 -0.1 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.7 -2.4 -0.8 +0.3 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.0 -3.1 +0.1 +0.2 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.7 -1.7 -0.3 -0.2 +0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 -4.6 -0.0 -0.6 +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -3.3 +0.4 +0.0 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -2.0 -0.1 -0.4 -0.1
stress methylglyoxal 0.032 vol% +0.8 -2.4 -0.7 -0.2 -0.9
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.3 -1.9 -0.2 -0.2 -0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.0 -1.4 -0.3 -0.1 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.0 -1.1 +0.2 +0.0 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.3 +0.4 +0.0 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -0.8 -0.4 +0.1 +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -1.2 +0.7 -0.1 -0.2
supernatant control Vogels_fungal_media 0.1X +0.4 -1.7 +0.5 -0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.0 +1.3 -1.7 +0.1 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 +0.3 +1.0 -0.0 -0.1
phage JP1 MOI 10 -0.5 +1.7 +0.6 -0.5 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.8 -0.8 +0.5 +0.4
soil soil sample 5; outgrowth in LB -0.2 +1.2 +0.6 -0.5 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.2 +1.1 -0.7 +0.0 -0.4
soil soil sample 3; outgrowth in LB +0.6 +1.2 -0.7 +0.3 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 +1.2 -0.6 -0.0 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 +0.8 -0.7 +0.3 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.0 -0.2 +0.5 +1.5
nophagecontrol Only library +0.1 +1.2 +0.8 -0.3 -0.3
phage P. simiae Grant Run MOI 10 -0.2 +0.6 +1.1 -0.3 +0.9
phage P. simiae OR1 MOI 0.1 +0.2 +1.5 +0.5 +0.2 -0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.8 +0.8 -0.2 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 +1.9 +0.1 -0.1 +0.2
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