Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04870 and PS417_04875 are separated by 2 nucleotidesPS417_04875 and PS417_04880 are separated by 247 nucleotidesPS417_04880 and PS417_04885 are separated by 53 nucleotidesPS417_04885 and PS417_04890 are separated by 115 nucleotides PS417_04870: PS417_04870 - molybdenum cofactor biosynthesis protein MoaD, at 1,082,352 to 1,082,594 _04870 PS417_04875: PS417_04875 - molybdenum cofactor biosynthesis protein MoaE, at 1,082,597 to 1,083,046 _04875 PS417_04880: PS417_04880 - hypothetical protein, at 1,083,294 to 1,084,265 _04880 PS417_04885: PS417_04885 - type IV secretion protein Rhs, at 1,084,319 to 1,089,088 _04885 PS417_04890: PS417_04890 - ATP-dependent RNA helicase RhlB, at 1,089,204 to 1,090,667 _04890
Group Condition PS417_04870 PS417_04875 PS417_04880 PS417_04885 PS417_04890
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -4.0 +0.4 +0.0 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.9 +0.0 +0.2 +0.2
stress Gentamicin 0.008 mg/ml N.D. -2.6 -0.4 -0.1 -0.4
carbon source 2-Deoxy-D-Ribose (C) N.D. -3.3 +0.0 +0.0 -0.1
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -2.8 -0.5 -0.0 +0.2
carbon source octanoate (C) N.D. -2.9 -0.1 +0.1 +0.1
carbon source Inosine (C) N.D. -2.8 +0.0 -0.0 +0.0
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -2.5 -0.2 +0.1 -0.2
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -3.0 +0.1 +0.1 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -2.7 +0.2 -0.0 -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. -2.4 -0.1 +0.0 -0.2
carbon source 2-Deoxy-D-Ribose (C) N.D. -2.4 -0.0 -0.0 -0.2
soil soil sample 8; outgrowth in LB N.D. -2.7 +0.2 -0.0 -0.1
carbon source 2-Deoxy-D-Ribose (C) N.D. -2.5 +0.1 -0.0 -0.1
nitrogen source nitrate (N) N.D. -2.5 +0.0 +0.0 -0.0
carbon source octanoate (C) N.D. -2.5 -0.0 +0.1 -0.0
soil soil sample 5; outgrowth in LB N.D. -2.3 +0.2 +0.1 -0.3
phage JP1 MOI 10 N.D. -1.6 -0.3 +0.0 -0.3
soil soil sample 7; outgrowth in LB N.D. -2.2 +0.0 -0.1 +0.0
carbon source Inosine (C) N.D. -2.3 +0.0 +0.1 +0.0
motility inner cut, LB soft agar motility assay N.D. -2.4 +0.1 +0.0 +0.0
phage P. simiae Grant Run MOI 10 N.D. -2.6 +0.3 +0.2 +0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -2.1 +0.0 +0.0 -0.0
soil soil sample 6; outgrowth in LB N.D. -2.4 +0.5 -0.0 -0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -1.9 -0.0 +0.1 -0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.9 +0.1 +0.0 -0.1
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) N.D. -1.8 +0.1 +0.0 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.8 -0.1 +0.1 +0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.6 -0.1 +0.2 +0.2
solid stress 80% Methanol 3 mM; solid stress N.D. -1.6 +0.3 -0.0 +0.1
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