Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_04845	PS417_04850	PS417_04855	PS417_04860	PS417_04865
carbon source	2'-Deoxyinosine 5 mM (C)	-0.1	+0.1	+0.2	-0.8	-3.2
nitrogen source	nitrate (N)	+0.1	-0.0	+0.0	-0.2	-3.6
carbon source	2'-Deoxyinosine 5 mM (C)	-0.4	+0.2	+0.1	-0.8	-2.0
carbon source	2-Deoxy-D-Ribose (C)	+0.0	+0.0	-0.0	-0.3	-2.7
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.3	+0.0	-0.0	+0.2	-2.9
carbon source	Inosine (C)	-0.0	-0.1	+0.1	-0.2	-2.7
carbon source	2-Deoxy-D-Ribose (C)	-0.1	+0.0	+0.0	-0.3	-2.5
carbon source	Inosine (C)	-0.2	+0.1	+0.0	-0.3	-2.4
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.3	+0.0	+0.1	-0.2	-2.3
carbon source	Ethanol (C)	-0.2	-0.1	-0.1	-1.7	-0.6
carbon source	Ethanol (C)	-0.1	-0.2	-0.1	-1.6	-0.6
carbon source	2-Deoxy-D-Ribose (C)	+0.1	+0.1	-0.0	+0.7	-3.5
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.1	-0.1	+0.3	-0.5	-2.1
carbon source	acetate (C)	-0.2	-0.2	+0.1	-1.4	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-0.1	+0.0	-0.4	-2.1
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.5	+0.1	+0.4	+0.4	-2.9
carbon source	Carbon source D-Mannitol 2.5 mM	-0.5	+0.0	+0.1	-1.0	-1.1
carbon source	octanoate (C)	-0.0	+0.2	+0.2	-0.4	-2.4
carbon source	2-Deoxy-D-Ribose (C)	-0.1	-0.0	+0.1	+0.9	-3.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.0	+0.4	-0.7	-1.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.1	-0.1	+0.2	-2.0	-0.1
carbon source	octanoate (C)	-0.1	+0.2	+0.3	-0.1	-2.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.3	+0.6	-0.4	-1.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.1	+0.1	+0.2	-1.9
soil	soil sample 5; outgrowth in LB	-0.0	+0.3	+0.1	+0.3	-1.8
solid stress	Fraxetin 3 mM; solid stress	+0.5	-0.2	+0.1	+0.5	-1.6
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	+0.4	+0.1	+0.8	-1.6
solid stress	Fraxetin 3 mM; solid stress	+0.0	-0.2	+0.2	+1.1	-1.5
solid stress	Fraxetin 3 mM; solid stress	-0.1	-0.3	+0.1	+1.3	-1.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	+0.2	+0.0	-0.1	+2.0