Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_04840	PS417_04845	PS417_04850	PS417_04855	PS417_04860
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.5	+0.1	-0.1	+0.2	-2.0
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.3	+0.1	+0.1	+0.0	-2.0
carbon source	Ethanol (C)	+0.1	-0.2	-0.1	-0.1	-1.7
carbon source	Ethanol (C)	+0.1	-0.1	-0.2	-0.1	-1.6
phage	JP1 MOI 10	-0.2	+0.2	-0.7	-0.3	-0.8
carbon source	Gly-Glu (C)	-0.5	-0.2	+0.1	+0.2	-1.3
carbon source	acetate (C)	+0.0	-0.2	-0.2	+0.1	-1.4
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.3	+0.1	+0.1	+0.1	-1.5
carbon source	Fumarate (C)	+0.1	-0.1	-0.2	+0.1	-1.5
carbon source	Gly-Glu (C)	-0.1	+0.0	-0.1	+0.2	-1.3
carbon source	L-Isoleucine (C)	+0.0	-0.2	+0.0	+0.2	-1.3
carbon source	2'-Deoxyinosine 5 mM (C)	-0.2	-0.4	+0.2	+0.1	-0.8
carbon source	Carbon source D-Mannitol 2.5 mM	+0.2	-0.5	+0.0	+0.1	-1.0
phage	JP1 MOI 0.1	-0.9	+0.0	-0.3	-0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.5	-0.4	-0.2	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	+0.2	-0.3	-0.2	-0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	-0.4	+0.0	+0.4	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.1	-0.0	+0.4	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-0.1	+0.4	+0.2	-0.6
seeds	Growth on radish seeds for 72 hours	+0.4	-0.4	-0.3	+0.5	+0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.3	+0.1	-0.3	+0.3	+0.6
carbon source	2-Deoxy-D-Ribose (C)	-0.4	-0.1	-0.0	+0.1	+0.9
solid stress	Fraxetin 3 mM; solid stress	-0.2	-0.1	-0.3	+0.1	+1.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.4	+0.3	+0.6	-0.4
solid stress	Fraxetin 1 mM; solid stress	+0.0	+0.1	-0.3	-0.0	+1.1
solid stress	Fraxetin 2 mM; solid stress	-0.1	+0.4	-0.1	-0.2	+0.9
agar plate interaction control	Taped volatile agar plate with no fungus	-0.0	-0.4	+0.4	+0.1	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.7	+0.2	+0.1	+0.1
stress	Phosphomycin 0.003 mg/ml	+0.5	+0.7	+0.0	+0.1	+0.3
stress	Phosphomycin 0.001 mg/ml	+0.6	+0.8	-0.1	+0.2	+0.4