Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00470	PS417_00475	PS417_00480	PS417_00485	PS417_00490
solid stress	Fraxetin 3 mM; solid stress	-0.2	-3.9	-0.0	-0.9	-0.1
solid stress	Fraxetin 3 mM; solid stress	+0.1	-4.5	+0.1	-0.1	+0.3
solid stress	Fraxetin 3 mM; solid stress	+0.3	-2.9	-0.2	-0.0	-0.0
stress	methylglyoxal 0.032 vol%	+0.5	-1.5	-1.0	-0.6	-0.3
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.2	-0.2	-1.4	+0.0	-1.2
solid stress	Fraxetin 3 mM; solid stress	+0.3	-2.1	-0.2	-0.3	-0.2
seeds	Growth on radish seeds for 72 hours	-0.1	-0.6	-0.4	-0.6	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	-1.7	-0.4	+0.2	-0.6
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.2	-0.6	-0.8	-0.6	-0.4
stress	R2A with Fusaric 120 ug/mL	+0.2	-0.9	-0.4	-0.5	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.1	-0.9	-0.1	-1.3	+0.1
solid stress	Fraxetin 2 mM; solid stress	+0.3	-1.3	-0.5	-0.4	-0.1
soil	soil sample 6; outgrowth in LB	+0.8	-0.7	-0.3	-1.1	-0.7
stress	Doxycycline hyclate 0.001 mg/ml	+0.5	-1.2	+0.0	-1.0	-0.1
seeds	Growth on radish seeds for 24 hours	+0.5	-0.4	-0.3	-0.7	-0.9
stress	R2A with Fusaric 120 ug/mL	+0.7	-1.2	-0.3	-0.5	-0.4
solid stress	Fraxetin 2 mM; solid stress	+0.1	-1.2	+0.4	-0.6	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	-0.6	-0.8	+0.6	-0.1
soil	soil sample 2; outgrowth in LB	-0.6	-0.8	-0.5	+0.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-1.7	+0.4	-0.8	+1.0
soil	soil sample 5; outgrowth in LB	+0.1	-1.6	-0.3	+0.0	+0.8
phage	P. simiae OR1 MOI 0.1	-0.2	-0.2	+0.7	+0.5	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.1	+0.7	-1.1	+0.4
supernatant control	Vogels_fungal_media 0.1X	+0.8	+0.1	-0.6	+0.4	-0.7
carbon source	L-Valine (C)	+0.7	+1.0	+0.1	-0.8	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	+0.3	+0.7	+0.6	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.0	+0.0	+0.3	+1.0	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	+1.2	+0.4	+0.2	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.1	+2.7	-0.2	+0.1	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.1	+2.6	-0.1	+0.2	+0.2