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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF943 and GFF944 are separated by 158 nucleotides
GFF944 and GFF945 are separated by 105 nucleotides
GFF945 and GFF946 are separated by 242 nucleotides
GFF946 and GFF947 are separated by 100 nucleotides
GFF943 - Intracellular PHB depolymerase, at 255,795 to 257,237
GFF943
GFF944 - Aromatic-amino-acid aminotransferase (EC 2.6.1.57), at 257,396 to 258,592
GFF944
GFF945 - Excinuclease ABC subunit B, at 258,698 to 260,806
GFF945
GFF946 - Iron-sulfur cluster regulator IscR, at 261,049 to 261,585
GFF946
GFF947 - Cysteine desulfurase (EC 2.8.1.7) => IscS, at 261,686 to 262,906
GFF947
Group
Condition
GFF943
GFF944
GFF945
GFF946
GFF947
complex community
Community=arabino-guar; Passage=4
-0.3
-3.4
-1.3
-5.8
N.D.
complex community
Community=guar; Passage=4
-0.7
-3.2
-0.8
-5.7
N.D.
complex community
Community=guar; Passage=4
-0.7
-3.2
-0.7
-5.6
N.D.
complex community
Community=arabino-guar; Passage=4
-0.4
-3.1
-0.7
-5.6
N.D.
complex community
Community=arabino-guar; Passage=4
-0.1
-3.0
-1.1
-5.4
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.3
-3.1
-0.6
-5.5
N.D.
complex community
Community=guar; Passage=4
-0.4
-2.9
-0.8
-5.3
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.4
-3.0
-0.5
-5.4
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.5
-2.9
-0.6
-5.3
N.D.
complex community
Community=arabino-guar; Passage=4
-0.1
-3.0
-0.7
-5.4
N.D.
complex community
Community=Kojac gum; Passage=4
-0.8
-2.9
-0.6
-4.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.4
-4.3
-0.1
-3.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.4
-3.4
-0.0
-4.1
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.2
-2.7
-0.4
-4.5
N.D.
complex community
Community=guar; Passage=4
-0.5
-3.0
-0.5
-3.7
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.4
-4.0
-0.1
-2.5
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.5
-3.7
-0.1
-2.5
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.4
-3.7
-0.1
-2.6
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
-3.7
-0.1
-2.5
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.4
-3.6
-0.0
-2.6
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.4
-3.8
-0.1
-2.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.5
-3.9
-0.1
-2.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.5
-3.8
-0.0
-2.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.4
-3.7
-0.1
-1.9
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.5
-3.4
-0.0
-1.9
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
-3.2
+0.0
-2.3
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.5
-3.8
-0.0
-1.4
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.5
-3.4
-0.1
-1.7
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.4
-3.4
-0.0
-1.9
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.7
-4.2
-0.0
-0.7
N.D.
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