Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00465	PS417_00470	PS417_00475	PS417_00480	PS417_00485
solid stress	Fraxetin 3 mM; solid stress	-0.3	-0.2	-3.9	-0.0	-0.9
solid stress	Fraxetin 3 mM; solid stress	-0.5	+0.1	-4.5	+0.1	-0.1
solid stress	Fraxetin 3 mM; solid stress	-0.3	+0.3	-2.9	-0.2	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.9	+0.1	-0.9	-0.1	-1.3
stress	methylglyoxal 0.032 vol%	-0.0	+0.5	-1.5	-1.0	-0.6
solid stress	Fraxetin 3 mM; solid stress	-0.2	+0.3	-2.1	-0.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	+0.2	-1.7	-0.4	+0.2
carbon source	2'-Deoxyinosine 5 mM (C)	-1.4	+0.2	+0.2	-0.6	-0.6
stress	Doxycycline hyclate 0.001 mg/ml	-0.4	+0.5	-1.2	+0.0	-1.0
stress	R2A with Fusaric 120 ug/mL	-0.4	+0.2	-0.9	-0.4	-0.5
solid stress	Fraxetin 2 mM; solid stress	-0.0	+0.3	-1.3	-0.5	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.2	-1.7	+0.4	-0.8
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	-0.4	-0.6	-0.8	+0.6
solid stress	Fraxetin 2 mM; solid stress	-0.3	-0.3	-1.2	+0.6	-0.3
solid stress	Fraxetin 2 mM; solid stress	-0.2	+0.1	-1.2	+0.4	-0.6
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.3	+0.2	-0.6	-0.8	-0.6
solid stress	Fraxetin 2 mM; solid stress	-0.4	+0.3	-1.1	+0.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	+0.4	-0.1	+0.4	-0.6
soil	soil sample 5; outgrowth in LB	+0.6	+0.1	-1.6	-0.3	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.2	+0.1	+0.7	-1.1
soil	soil sample 6; outgrowth in LB	+0.3	+0.8	-0.7	-0.3	-1.1
stress	R2A with Fusaric 120 ug/mL	+0.6	+0.7	-1.2	-0.3	-0.5
phage	JP1 MOI 1	-1.2	+0.7	+0.6	+0.1	-0.1
seeds	Growth on radish seeds for 72 hours	+1.1	+0.3	-1.0	+0.0	-0.3
phage	P. simiae OR Antrim MOI 1	-0.6	-0.5	+0.2	+0.2	+1.1
carbon source	L-Valine (C)	-0.2	+0.7	+1.0	+0.1	-0.8
seeds	Growth on radish seeds for 72 hours	+1.6	-0.2	-0.2	-0.3	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.1	-0.1	+2.7	-0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.5	+1.0	+0.0	+0.3	+1.0
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.2	+0.1	+2.6	-0.1	+0.2