Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_04750	PS417_04755	PS417_04760	PS417_04765	PS417_04770
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-1.3	-1.3	-0.0	+0.1	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-1.5	-1.4	-0.1	+0.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-1.4	-1.4	+0.1	+0.2	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.9	-1.5	-0.3	+0.1	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-1.2	-1.2	-0.2	+0.1	+0.2
stress	1-ethyl-3-methylimidazolium acetate 35 mM	-0.8	-1.6	+0.3	+0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	+0.0	-0.4	-0.6	-0.4
phage	JP1 MOI 1	-0.7	-0.4	+0.1	-0.4	-0.3
phage moi 100	Time6-phageFRS	-0.3	-0.1	-0.8	-0.3	+0.1
phage	P. simiae OR Antrim MOI 1	-0.3	+0.1	-0.5	+0.2	-0.7
phage	JP1 MOI 1	-0.1	-0.7	-0.4	+0.5	-0.4
phage	JP1 MOI 0.1	-0.7	-0.3	+0.4	+0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.0	-0.6	+0.7	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	-0.6	+0.3	-0.3	-0.2	+0.3
phage	P. simiae ORA MOI 10	+0.1	+0.1	+0.5	-0.5	-0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.3	-0.3	+0.1	-0.7	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	-0.2	-0.5	+0.4	-0.3
stress	methylglyoxal 0.032 vol%	+0.4	-0.5	-0.8	+0.4	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+1.0	+0.1	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.3	-0.4	+0.8	+0.0
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	+0.2	+0.4	-0.8	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	+0.0	+0.8	+0.4	+0.0
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	-0.4	-0.2	+0.3	+0.6	+0.4
phage	Wcs_1	-0.3	+0.3	+0.7	+0.5	-0.0
soil	soil sample 7; outgrowth in LB	+0.5	-0.2	+0.7	+0.4	-0.2
seeds	Growth on radish seeds for 24 hours	+0.5	-0.3	+0.6	+0.1	+0.4
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.2	-0.1	+0.6	+0.7	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.2	-0.2	+1.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	+1.0	-0.5	+1.0	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+3.0	+1.3	+0.2	+1.2	+0.0