Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_04730	PS417_04735	PS417_04740	PS417_04745	PS417_04750
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.2	-1.6	-1.7	-2.1	-1.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.0	-1.9	-1.8	-1.7	-1.5
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.1	-1.5	-1.2	-1.5	-1.2
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.3	-1.2	-1.3	-1.4	-1.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.1	-1.3	-1.3	-1.5	-0.9
stress	1-ethyl-3-methylimidazolium acetate 35 mM	+0.2	-0.7	-0.8	-0.8	-0.8
carbon source	octanoate (C)	-0.2	-2.8	+0.1	+0.1	+0.0
carbon source	octanoate (C)	-0.2	-2.5	-0.0	+0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.5	-0.4	+0.6	-0.5
phage	P. simiae OR Antrim MOI 1	-0.7	+0.5	-0.2	+0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+1.0	-0.6	-0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.9	-0.2	-0.5	+0.0
soil	soil sample 7; outgrowth in LB	-0.2	+0.7	-0.4	-0.2	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+1.4	-0.5	-0.3	+0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.5	+0.7	-0.4	-0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+1.1	-0.3	+0.1	-0.5
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.0	+1.7	-0.3	-0.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	+0.2	-0.1	+0.3	-0.5
soil	soil sample 6; outgrowth in LB	+0.3	+0.9	-0.2	+0.3	-0.3
soil	soil sample 2; outgrowth in LB	+0.0	+1.5	-0.5	-0.4	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.5	-0.4	-0.2	+0.9
soil	soil sample 3; outgrowth in LB	-0.7	+2.1	-0.1	-0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+1.2	-0.3	+0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+1.4	-0.2	-0.1	-0.1
soil	soil sample 5; outgrowth in LB	-0.2	+1.9	-0.2	+0.1	-0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.4	+1.2	+0.1	-0.4	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.6	-0.1	+0.3	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	+1.5	+0.5	+0.0	-0.1
soil	soil sample 4; outgrowth in LB	-0.1	+2.4	-0.2	+0.3	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	+4.3	+2.5	+1.5	+3.0