Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04720 and PS417_04725 overlap by 4 nucleotidesPS417_04725 and PS417_04730 are separated by 123 nucleotidesPS417_04730 and PS417_04735 are separated by 124 nucleotidesPS417_04735 and PS417_04740 are separated by 180 nucleotides PS417_04720: PS417_04720 - GNAT family acetyltransferase, at 1,047,455 to 1,047,937 _04720 PS417_04725: PS417_04725 - chemotaxis protein CheW, at 1,047,934 to 1,048,836 _04725 PS417_04730: PS417_04730 - bifunctional glyoxylate/hydroxypyruvate reductase B, at 1,048,960 to 1,049,934 _04730 PS417_04735: PS417_04735 - LysR family transcriptional regulator, at 1,050,059 to 1,051,027 _04735 PS417_04740: PS417_04740 - RND transporter, at 1,051,208 to 1,052,719 _04740
Group Condition PS417_04720 PS417_04725 PS417_04730 PS417_04735 PS417_04740
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X N.D. +0.0 -0.2 -1.6 -1.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X N.D. +0.4 -0.0 -1.9 -1.8
carbon source octanoate (C) N.D. -0.3 -0.2 -2.8 +0.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -0.1 -0.1 -1.5 -1.2
carbon source octanoate (C) N.D. +0.2 -0.2 -2.5 -0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X N.D. +0.3 +0.1 -1.3 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 -0.4 -0.5 -0.4
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. +0.4 +0.3 -1.2 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.6 +0.5 +0.1 -0.5
stress 1-ethyl-3-methylimidazolium acetate 35 mM N.D. -0.2 +0.2 -0.7 -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.6 -0.4 +0.8 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.4 -0.2 +0.8 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.3 +0.2 +0.7 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.2 +0.4 +0.4 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 -0.1 +1.0 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 -0.2 +1.2 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 -0.3 +1.4 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 +0.3 +1.1 -0.3
soil soil sample 3; outgrowth in LB N.D. -0.4 -0.7 +2.1 -0.1
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. +0.3 +0.5 +0.7 -0.4
soil soil sample 2; outgrowth in LB N.D. +0.2 +0.0 +1.5 -0.5
soil soil sample 5; outgrowth in LB N.D. -0.1 -0.2 +1.9 -0.2
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.8 +0.2 +0.5 -0.2
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +0.0 -0.0 +1.7 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.2 +0.2 +1.4 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 +0.0 +1.3 +0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -0.0 -0.2 +1.5 +0.5
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. +0.2 +0.4 +1.2 +0.1
soil soil sample 4; outgrowth in LB N.D. +0.3 -0.1 +2.4 -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. +0.2 -0.1 +4.3 +2.5
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