Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF929 and GFF930 are separated by 27 nucleotidesGFF930 and GFF931 are separated by 128 nucleotidesGFF931 and GFF932 are separated by 10 nucleotidesGFF932 and GFF933 overlap by 7 nucleotides GFF929 - Transcriptional regulator, IclR family, at 241,791 to 242,579 GFF929 GFF930 - Transcriptional regulator, GntR family, at 242,607 to 243,248 GFF930 GFF931 - Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2), at 243,377 to 245,539 GFF931 GFF932 - Acetyltransferase, GNAT family, at 245,550 to 246,026 GFF932 GFF933 - YgfD: protein that forms a complex with the methylmalonyl-CoA mutase in a pathway for conversion of succinyl-CoA to propionyl-CoA, at 246,020 to 247,069 GFF933
Group Condition GFF929 GFF930 GFF931 GFF932 GFF933
complex community Community=Locust bean gum; Passage=4 -0.4 -0.4 -1.8 -1.5 -1.8
complex community Community=Locust bean gum; Passage=4 -0.0 -0.1 -1.8 -0.9 -0.9
complex community Community=guar; Passage=4 +0.0 -0.1 -1.3 -1.7 -0.6
complex community Community=Locust bean gum; Passage=4 -0.1 +0.0 -2.0 -1.4 -0.0
complex community Community=Locust bean gum; Passage=4 -0.2 -0.3 -1.3 -1.0 -0.7
complex community Community=guar; Passage=4 -0.6 -0.0 -1.8 -0.8 -0.3
complex community Community=Kojac gum; Passage=4 -0.5 -0.0 -1.6 -1.1 -0.1
complex community Community=arabino-guar; Passage=4 -0.0 -0.2 -1.0 -1.2 -0.6
complex community Community=guar; Passage=4 +0.1 -0.2 -1.8 -1.3 +0.2
complex community Community=arabino-guar; Passage=4 +0.0 -0.3 -0.9 -0.2 -1.1
complex community Community=arabino-guar; Passage=4 -0.0 -0.8 -0.7 -0.3 -0.5
complex community Community=arabino-guar; Passage=4 -0.1 -0.8 -1.0 -0.3 +0.0
complex community Community=guar; Passage=4 +0.2 -0.1 -1.6 -0.5 +0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.0 +0.1 -0.1 -1.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 -0.1 -0.2 -0.4 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 -0.1 -0.2 -0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.0 -0.1 -0.6 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.0 -0.2 -0.2 -0.1 -0.2
complex community Community=Locust bean gum; Passage=1 -0.1 +0.1 -0.0 -0.4 +0.0
no phage control no phage control +0.2 -0.1 +0.0 -0.5 +0.1
phage phage_bap4 +0.1 +0.2 +0.1 -0.8 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 +0.1 -0.2 -0.3 -0.2
phage phage_bap4 +0.2 -0.1 +0.0 -0.1 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.0 -0.2 -0.3 +0.2
vitamin M9 with Supernatant from Cyptococcus +0.2 -0.2 -0.1 +0.4 -0.2
phage phage_bap4 +0.3 +0.3 +0.1 +0.0 -0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.0 -0.1 +0.5 +0.2
no phage control no phage control +0.1 +0.4 +0.0 -0.3 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 -0.2 +0.1 +0.4 +0.2
vitamin M9 with Supernatant from Cyptococcus +0.1 +0.1 +0.0 +0.5 +0.2
remove
GFF929
plot		 remove
GFF930
plot		 remove
GFF931		 remove
GFF932
plot		 remove
GFF933
plot