Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_04710 and PS417_04715 are separated by 43 nucleotidesPS417_04715 and PS417_04720 are separated by 107 nucleotidesPS417_04720 and PS417_04725 overlap by 4 nucleotidesPS417_04725 and PS417_04730 are separated by 123 nucleotides PS417_04710: PS417_04710 - amino acid ABC transporter substrate-binding protein, at 1,045,790 to 1,046,560 _04710 PS417_04715: PS417_04715 - Fe-S oxidoreductase, at 1,046,604 to 1,047,347 _04715 PS417_04720: PS417_04720 - GNAT family acetyltransferase, at 1,047,455 to 1,047,937 _04720 PS417_04725: PS417_04725 - chemotaxis protein CheW, at 1,047,934 to 1,048,836 _04725 PS417_04730: PS417_04730 - bifunctional glyoxylate/hydroxypyruvate reductase B, at 1,048,960 to 1,049,934 _04730
Group Condition PS417_04710 PS417_04715 PS417_04720 PS417_04725 PS417_04730
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.0 N.D. -1.6 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.3 N.D. -1.4 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.3 N.D. -1.3 +0.2
soil soil sample 3; outgrowth in LB -0.2 -0.2 N.D. -0.4 -0.7
seeds Growth on radish seeds for 72 hours -0.5 -1.0 N.D. -0.0 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.1 N.D. -1.0 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.1 N.D. -1.2 +0.4
phage P. simiae OR Antrim MOI 1 +0.4 -0.2 N.D. -0.2 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 -0.4 N.D. -0.5 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.3 N.D. -1.6 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 +0.4 N.D. -0.6 -0.4
phage P. simiae Grant Run MOI 10 +0.3 +0.1 N.D. -0.4 -0.5
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.2 N.D. -0.4 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.9 N.D. +0.9 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.7 N.D. +0.3 -0.0
phage P. simiae ORA MOI 0.1 -0.1 +0.5 N.D. +0.2 -0.6
phage P. simiae ORA MOI 10 -0.5 +0.4 N.D. +0.3 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.1 N.D. -0.6 +0.8
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +0.8 N.D. -0.6 -0.3
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 +0.1 N.D. -0.7 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 +0.6 N.D. -0.9 +0.2
phage P. simiae ORA MOI 0.1 -0.6 +0.3 N.D. +0.2 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.5 -0.2 N.D. -0.2 +0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.5 N.D. +0.2 -0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 -0.0 N.D. -0.4 +0.9
phage JP1 MOI 0.1 +0.2 +0.5 N.D. +0.5 -0.3
rhizosphere rhizosphere sample 2; outgrowth in LB -0.3 +0.5 N.D. +0.2 +0.4
carbon source 2'-Deoxyinosine 5 mM (C) -0.3 +0.2 N.D. +0.8 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +0.7 N.D. -0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 +1.0 N.D. +0.6 -0.0
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