Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_04670	PS417_04675	PS417_04680	PS417_04685	PS417_04690
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-0.1	+0.9	-0.2	-4.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.2	+0.0	-0.1	-2.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-0.0	+0.7	-0.4	-2.7
nitrogen source	Uridine (N)	N.D.	-0.1	+0.1	-1.9	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.4	+0.0	-1.3	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.2	-0.0	-1.4	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.1	+0.2	-1.2	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.0	+0.1	-1.6	+0.2
carbon source	L-Valine (C)	N.D.	-0.1	+0.3	-0.9	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.1	+0.6	-0.2	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.5	-0.1	-0.3	-0.8
seeds	Growth on radish seeds for 72 hours	N.D.	-0.5	-0.1	-0.8	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.3	+0.2	-1.3	+0.1
phage	Wcs_1	N.D.	-0.7	-0.3	-0.2	+0.6
phage	P. simiae OR Antrim MOI 0.1	N.D.	+0.6	+0.1	-0.6	-0.4
solid stress	Fraxetin 3 mM; solid stress	N.D.	-0.2	+0.1	-0.8	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.7	+0.1	-1.3	+0.4
stress	methylglyoxal 0.032 vol%	N.D.	-0.2	+0.2	-0.7	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+1.2	+0.2	-1.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.6	-0.1	-0.5	+0.6
stress	Phosphomycin 0.003 mg/ml	N.D.	-0.1	+0.1	+1.2	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	+0.1	+0.2	-0.3	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.8	+0.2	-0.3	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	+0.1	+0.2	-0.3	+1.2
stress	Phosphomycin 0.001 mg/ml	N.D.	-0.2	+0.1	+1.6	-0.0
stress	Paraquat dichloride 0.008 mg/ml	N.D.	-0.2	+1.7	+0.2	-0.1
stress	Phosphomycin 0.002 mg/ml	N.D.	+0.1	+0.1	+1.5	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+1.5	+0.5	-0.5	+0.5
phage	JP1 MOI 0.1	N.D.	+0.2	+0.2	+0.7	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+1.3	+0.5	-0.6	+0.8