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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF920 and GFF921 are separated by 47 nucleotides
GFF921 and GFF922 are separated by 22 nucleotides
GFF922 and GFF923 are separated by 177 nucleotides
GFF923 and GFF924 are separated by 100 nucleotides
GFF920 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 232,765 to 233,994
GFF920
GFF921 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 234,042 to 235,331
GFF921
GFF922 - hypothetical protein, at 235,354 to 235,749
GFF922
GFF923 - Chromosome partition protein smc, at 235,927 to 236,310
GFF923
GFF924 - hypothetical protein, at 236,411 to 237,208
GFF924
Group
Condition
GFF920
GFF921
GFF922
GFF923
GFF924
complex community
Community=arabino-guar; Passage=4
-0.9
-0.4
+0.1
-0.9
-0.2
complex community
Community=arabino-guar; Passage=4
-0.1
-0.1
+0.3
-1.6
-0.2
complex community
Community=arabino-guar; Passage=4
+0.0
-0.4
-0.3
-1.0
+0.3
vitamin
M9 with Supernatant from Cyptococcus
-0.2
+0.1
-0.2
-0.5
-0.3
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.3
+0.0
-0.1
-0.4
-0.2
complex community
Community=Locust bean gum; Passage=4
-0.9
-0.1
+0.3
+0.5
-0.7
phage
phage_bap4
+0.1
+0.0
-0.1
-0.5
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.3
+0.0
-0.2
-0.4
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
+0.1
-0.3
-0.3
-0.0
complex community
Community=Locust bean gum; Passage=4
+0.4
+0.1
-0.3
-0.8
-0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.2
+0.1
-0.4
-0.3
complex community
Community=Locust bean gum; Passage=4
+0.3
+0.1
-0.2
-0.7
-0.1
phage
phage_bap4
-0.1
+0.1
-0.0
-0.6
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.3
-0.2
-0.3
+0.0
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
+0.0
+0.0
-0.3
+0.1
no phage control
no phage control
-0.2
+0.1
+0.1
-0.3
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
+0.0
-0.2
-0.5
+0.1
complex community
Community=guar; Passage=4
-0.2
+0.1
-0.0
+0.2
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
+0.1
+0.2
-0.6
+0.2
complex community
Community=arabino-guar; Passage=4
-0.1
+0.3
-0.1
+0.1
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.0
-0.3
+0.4
-0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.3
-0.1
-0.1
+0.5
+0.0
complex community
Community=Kojac gum; Passage=4
+0.2
+0.3
-0.1
+0.4
-0.9
vitamin
M9 with Supernatant from Cyptococcus
-0.3
+0.0
-0.1
+0.2
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.4
-0.1
+0.1
+0.3
+0.2
complex community
Community=guar; Passage=4
-0.3
+0.2
+0.0
+0.2
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
+0.2
-0.2
+0.2
+0.2
no phage control
no phage control
-0.1
+0.2
+0.2
+0.2
+0.1
complex community
Community=guar; Passage=4
+0.4
+0.3
+0.1
-0.1
-0.2
complex community
Community=Locust bean gum; Passage=4
+0.7
+0.2
+0.5
+0.7
-0.2
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