Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_04665	PS417_04670	PS417_04675	PS417_04680	PS417_04685
nitrogen source	Uridine (N)	N.D.	N.D.	-0.1	+0.1	-1.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.4	+0.0	-1.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.0	+0.1	-1.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.1	+0.0	-1.5
seeds	Growth on radish seeds for 72 hours	N.D.	N.D.	-0.5	-0.1	-0.8
phage	Wcs_1	N.D.	N.D.	-0.7	-0.3	-0.2
soil	soil sample 3; outgrowth in LB	N.D.	N.D.	-0.3	+0.1	-1.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.2	-0.0	-1.4
soil	soil sample 6; outgrowth in LB	N.D.	N.D.	-0.1	+0.2	-1.2
nitrogen source	Cytosine (N)	N.D.	N.D.	+0.0	+0.0	-1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	N.D.	+0.1	+0.2	-1.2
carbon source	L-Valine (C)	N.D.	N.D.	-0.1	+0.3	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.3	+0.2	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.7	+0.1	-1.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.2	+0.2	-0.8
phage	P. simiae OR Antrim MOI 0.1	N.D.	N.D.	+0.6	+0.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+1.2	+0.2	-1.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	-0.1	+0.9	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.8	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.9	+0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.6	-0.1	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+1.3	+0.5	-0.6
stress	Paraquat dichloride 0.002 mg/ml	N.D.	N.D.	+0.1	+0.8	+0.3
stress	Phosphomycin 0.003 mg/ml	N.D.	N.D.	-0.1	+0.1	+1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+1.5	+0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.6	+0.1	+0.8
stress	Phosphomycin 0.001 mg/ml	N.D.	N.D.	-0.2	+0.1	+1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.3	+0.2	+1.1
stress	Paraquat dichloride 0.008 mg/ml	N.D.	N.D.	-0.2	+1.7	+0.2
stress	Phosphomycin 0.002 mg/ml	N.D.	N.D.	+0.1	+0.1	+1.5